From dc05767451e633a5ece85c41e431829b32e01c13 Mon Sep 17 00:00:00 2001
From: Martin Weise <martin.weise@tuwien.ac.at>
Date: Tue, 10 Oct 2023 10:14:55 +0200
Subject: [PATCH] Added auth
---
docs/system-databases-auth.md | 24 ++++++
docs/system-databases-data.md | 20 +++--
docs/system-databases-metadata.md | 19 +++--
docs/system-databases-search.md | 14 +++-
docs/system-services-broker.md | 2 +-
docs/system-services-data.md | 29 +++++++
docs/system-services-mirror.md | 38 +++++++++
misc/.$architecture.drawio.dtmp | 135 +++++++++++++++++++++++++++---
misc/architecture.drawio | 135 +++++++++++++++++++++++++++---
misc/diagrams.drawio | 113 -------------------------
misc/diagrams2.drawio | 1 -
misc/env.json | 9 --
mkdocs.yml | 3 +
13 files changed, 380 insertions(+), 162 deletions(-)
create mode 100644 docs/system-databases-auth.md
create mode 100644 docs/system-services-data.md
create mode 100644 docs/system-services-mirror.md
delete mode 100644 misc/diagrams.drawio
delete mode 100644 misc/diagrams2.drawio
delete mode 100644 misc/env.json
diff --git a/docs/system-databases-auth.md b/docs/system-databases-auth.md
new file mode 100644
index 0000000..e8de96c
--- /dev/null
+++ b/docs/system-databases-auth.md
@@ -0,0 +1,24 @@
+---
+author: Martin Weise
+---
+
+# Auth Database
+
+## tl;dr
+
+!!! debug "Debug Information"
+
+ * Ports: 3306/tcp, 9100/tcp
+ * Prometheus: `http://:9100/metrics`
+
+## Overview
+
+tbd
+
+## Limitations
+
+(none)
+
+## Security
+
+(none)
diff --git a/docs/system-databases-data.md b/docs/system-databases-data.md
index 6c407ba..c3c0987 100644
--- a/docs/system-databases-data.md
+++ b/docs/system-databases-data.md
@@ -4,17 +4,21 @@ author: Martin Weise
# Data Database
+## tl;dr
+
!!! debug "Debug Information"
* Ports: 3306/tcp, 9100/tcp
* Prometheus: `http://:9100/metrics`
-It is the core component of the project. It is a relational database that contains metadata about all researcher
-databases
-created in the database repository like column names, check expressions, value enumerations or key/value constraints and
-relevant data for citing data sets. Additionally, the concept, e.g. URI of units of measurements of numerical columns is
-stored in the Metadata Database in order to provide semantic knowledge context. We use MariaDB for its rich capabilities
-in the reference implementation.
+## Overview
+
+It is the core component of the project.
+
+## Limitations
+
+(none)
+
+## Security
-The default credentials are `root:dbrepo` for the database `fda`. Connect to the database via the JDBC connector on
-port `3306`.
+(none)
diff --git a/docs/system-databases-metadata.md b/docs/system-databases-metadata.md
index b88d264..36c66b3 100644
--- a/docs/system-databases-metadata.md
+++ b/docs/system-databases-metadata.md
@@ -4,17 +4,26 @@ author: Martin Weise
# Metadata Database
+## tl;dr
+
!!! debug "Debug Information"
* Ports: 3306/tcp, 9100/tcp
* Prometheus: `http://:9100/metrics`
It is the core component of the project. It is a relational database that contains metadata about all researcher
-databases
-created in the database repository like column names, check expressions, value enumerations or key/value constraints and
-relevant data for citing data sets. Additionally, the concept, e.g. URI of units of measurements of numerical columns is
-stored in the Metadata Database in order to provide semantic knowledge context. We use MariaDB for its rich capabilities
-in the reference implementation.
+database created in the database repository like column names, check expressions, value enumerations or key/value
+constraints and relevant data for citing data sets. Additionally, the concept, e.g. URI of units of measurements of
+numerical columns is stored in the Metadata Database in order to provide semantic knowledge context. We use MariaDB for
+its rich capabilities in the reference implementation.
The default credentials are `root:dbrepo` for the database `fda`. Connect to the database via the JDBC connector on
port `3306`.
+
+## Limitations
+
+(none)
+
+## Security
+
+(none)
diff --git a/docs/system-databases-search.md b/docs/system-databases-search.md
index 388fb94..74eae82 100644
--- a/docs/system-databases-search.md
+++ b/docs/system-databases-search.md
@@ -4,11 +4,15 @@ author: Martin Weise
# Search Database
+## tl;dr
+
!!! debug "Debug Information"
* Ports: 9200/tcp
* Indexes: `http://:9200/_all`
- * Health: `http://:9200/_cluster/health/`
+ * Health: `http://:9200/_cluster/health`
+
+## Overview
It processes search requests from the Gateway Service for full-text lookups in the metadata database. We use
[Elasticsearch](https://www.elastic.co/) in the reference implementation. The search database implements Elastic Search
@@ -16,3 +20,11 @@ and creates a retrievable index on all databases that is getting updated with ea
metadata database.
All requests need to be authenticated, by default the credentials `elastic:elastic` are used.
+
+## Limitations
+
+(none)
+
+## Security
+
+(none)
diff --git a/docs/system-services-broker.md b/docs/system-services-broker.md
index 30cfcf1..d166a8b 100644
--- a/docs/system-services-broker.md
+++ b/docs/system-services-broker.md
@@ -34,7 +34,7 @@ the [usage](/infrastructures/dbrepo/latest/usage-broker) page.
## Limitations
-* No support for MQTT messaging as the protocol does not support virtual hosts other than `/`.
+* No support for MQTT.
## Security
diff --git a/docs/system-services-data.md b/docs/system-services-data.md
new file mode 100644
index 0000000..ae39218
--- /dev/null
+++ b/docs/system-services-data.md
@@ -0,0 +1,29 @@
+---
+author: Martin Weise
+---
+
+# Data Service
+
+## tl;dr
+
+!!! debug "Debug Information"
+
+ * Ports: 9093/tcp
+ * Info: `http://:9093/actuator/info`
+ * Health: `http://:9093/actuator/health`
+ * Prometheus: `http://:9093/actuator/prometheus`
+ * Swagger UI: `http://:9093/swagger-ui/index.html` <a href="/infrastructures/dbrepo/latest/swagger/data" target="_blank">:fontawesome-solid-square-up-right: view online</a>
+
+## Overview
+
+The Data Service is responsible for inserting AMQP tuples from the Broker Service into the Data DB
+via [Spring AMQP](https://docs.spring.io/spring-amqp/reference/html/). To increase the number of consumers, scale the
+Data Service up.
+
+## Limitations
+
+(none)
+
+## Security
+
+(none)
diff --git a/docs/system-services-mirror.md b/docs/system-services-mirror.md
new file mode 100644
index 0000000..962e387
--- /dev/null
+++ b/docs/system-services-mirror.md
@@ -0,0 +1,38 @@
+---
+author: Martin Weise
+---
+
+# Mirror Service
+
+## tl;dr
+
+!!! debug "Debug Information"
+
+ * Ports: 9050/tcp
+ * Info: `http://:9050/actuator/info`
+ * Health: `http://:9050/actuator/health`
+ * Prometheus: `http://:9050/actuator/prometheus`
+ * Swagger UI: `http://:9050/swagger-ui/index.html` <a href="/infrastructures/dbrepo/latest/swagger/mirror" target="_blank">:fontawesome-solid-square-up-right: view online</a>
+
+## Overview
+
+This service mirrors relevant table from the Metadata DB into the Search DB:
+
+| Metadata DB | ↦ | Search DB |
+|---------------------|:-------:|---------------|
+| `mdb_users` | | `/user` |
+| `mdb_view` | | `/view` |
+| `mdb_databases` | | `/database` |
+| `mdb_identifiers` | | `/identifier` |
+| `mdb_concepts` | | `/concept` |
+| `mdb_columns` | | `/column` |
+| `mdb_tables` | | `/table` |
+| `mdb_units` | | `/unit` |
+
+## Limitations
+
+(none)
+
+## Security
+
+(none)
diff --git a/misc/.$architecture.drawio.dtmp b/misc/.$architecture.drawio.dtmp
index d809737..c49c960 100644
--- a/misc/.$architecture.drawio.dtmp
+++ b/misc/.$architecture.drawio.dtmp
@@ -1,6 +1,6 @@
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+<mxfile host="Electron" modified="2023-10-09T13:32:35.850Z" agent="Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) draw.io/21.1.2 Chrome/106.0.5249.199 Electron/21.4.3 Safari/537.36" etag="X9gFSGQvzpDT4o0pkceQ" version="21.1.2" type="device" pages="6">
<diagram id="mvBsv1rP8O80Qe3yGnn_" name="docker-compose">
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+ <mxGraphModel dx="1434" dy="822" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="1169" pageHeight="827" math="0" shadow="0">
<root>
<mxCell id="0" />
<mxCell id="1" parent="0" />
@@ -37,7 +37,7 @@
</Array>
</mxGeometry>
</mxCell>
- <mxCell id="YJRAzF6yD4Hh-bAvO1PB-19" value="HTTP" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" vertex="1" connectable="0" parent="V1Wl26Vbpgnno5Lb-wtg-43">
+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-19" value="HTTP" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-43" vertex="1" connectable="0">
<mxGeometry x="-0.6602" relative="1" as="geometry">
<mxPoint x="-3" as="offset" />
</mxGeometry>
@@ -57,7 +57,7 @@
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</mxGeometry>
</mxCell>
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+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-18" value="HTTP" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-45" vertex="1" connectable="0">
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<mxPoint as="offset" />
</mxGeometry>
@@ -82,7 +82,7 @@
<mxPoint x="689.9999999999998" y="586" as="sourcePoint" />
</mxGeometry>
</mxCell>
- <mxCell id="YJRAzF6yD4Hh-bAvO1PB-16" value="JDBC" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" vertex="1" connectable="0" parent="V1Wl26Vbpgnno5Lb-wtg-48">
+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-16" value="JDBC" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-48" vertex="1" connectable="0">
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@@ -90,7 +90,7 @@
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<mxGeometry x="560" y="566" width="130" height="40" as="geometry" />
</mxCell>
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+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-15" value="Spring AMQP" style="edgeStyle=orthogonalEdgeStyle;rounded=0;orthogonalLoop=1;jettySize=auto;html=1;exitX=1;exitY=0.5;exitDx=0;exitDy=0;entryX=0.5;entryY=0;entryDx=0;entryDy=0;jumpStyle=arc;dashed=1;strokeWidth=1;dashPattern=1 1;fontSize=9;" parent="1" source="AQz-Vj6r_5Wor37pQVs6-1" target="YJRAzF6yD4Hh-bAvO1PB-1" edge="1">
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@@ -183,34 +183,34 @@
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</mxCell>
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@@ -2292,4 +2292,115 @@
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</mxGraphModel>
</diagram>
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-17" value="default-user-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-18" value="default-identifier-handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-19" value="default-database-handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-20" value="default-container-handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-21" value="default-table-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-22" value="default-query-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
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+ </mxCell>
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+ </mxCell>
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+ </mxCell>
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-28" value="escalated-identifier-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-30" value="default-maintenance-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-31" value="default-user-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
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+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-32" value="default-semantics-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
+ <mxGeometry x="452" y="226" width="120" height="40" as="geometry" />
+ </mxCell>
+ <mxCell id="Gou0UibUgwIY_gQY8MW6-33" value="escalated-semantics-<br>handling" style="rounded=1;whiteSpace=wrap;html=1;" vertex="1" parent="1">
+ <mxGeometry x="452" y="346" width="120" height="40" as="geometry" />
+ </mxCell>
+ </root>
+ </mxGraphModel>
+ </diagram>
</mxfile>
diff --git a/misc/architecture.drawio b/misc/architecture.drawio
index f53478c..42d8ff8 100644
--- a/misc/architecture.drawio
+++ b/misc/architecture.drawio
@@ -1,6 +1,6 @@
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+<mxfile host="Electron" modified="2023-10-09T13:32:32.067Z" agent="Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) draw.io/21.1.2 Chrome/106.0.5249.199 Electron/21.4.3 Safari/537.36" etag="vP05TgT4KgZ8CKf7K28_" version="21.1.2" type="device" pages="6">
<diagram id="mvBsv1rP8O80Qe3yGnn_" name="docker-compose">
- <mxGraphModel dx="1509" dy="865" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="1169" pageHeight="827" math="0" shadow="0">
+ <mxGraphModel dx="1434" dy="822" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="1169" pageHeight="827" math="0" shadow="0">
<root>
<mxCell id="0" />
<mxCell id="1" parent="0" />
@@ -37,7 +37,7 @@
</Array>
</mxGeometry>
</mxCell>
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+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-19" value="HTTP" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-43" vertex="1" connectable="0">
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@@ -57,7 +57,7 @@
</Array>
</mxGeometry>
</mxCell>
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+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-18" value="HTTP" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-45" vertex="1" connectable="0">
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@@ -82,7 +82,7 @@
<mxPoint x="689.9999999999998" y="586" as="sourcePoint" />
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</mxCell>
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+ <mxCell id="YJRAzF6yD4Hh-bAvO1PB-16" value="JDBC" style="edgeLabel;html=1;align=center;verticalAlign=middle;resizable=0;points=[];fontSize=9;" parent="V1Wl26Vbpgnno5Lb-wtg-48" vertex="1" connectable="0">
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@@ -90,7 +90,7 @@
<mxCell id="hBEam5F8n4ZBPeoiEcWH-1" value="Metadata Service" style="rounded=1;whiteSpace=wrap;html=1;" parent="1" vertex="1">
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</mxCell>
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@@ -2292,4 +2292,115 @@
</root>
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diff --git a/misc/diagrams.drawio b/misc/diagrams.drawio
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index fbd74ff..0000000
--- a/misc/diagrams.drawio
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diff --git a/misc/diagrams2.drawio b/misc/diagrams2.drawio
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+++ /dev/null
@@ -1 +0,0 @@
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\ No newline at end of file
diff --git a/misc/env.json b/misc/env.json
deleted file mode 100644
index 4184042..0000000
--- a/misc/env.json
+++ /dev/null
@@ -1,9 +0,0 @@
-{
- "language_tabs": [
- {
- "python": "Python"
- },{
- "java": "Java"
- }
- ]
-}
diff --git a/mkdocs.yml b/mkdocs.yml
index 0b64037..02a6690 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -18,9 +18,12 @@ nav:
- Authentication Service: system-services-authentication.md
- Broker Service: system-services-broker.md
- Gateway Service: system-services-gateway.md
+ - Data Service: system-services-data.md
- Metadata Service: system-services-metadata.md
+ - Mirror Service: system-services-mirror.md
- Upload Service: system-services-upload.md
- Databases:
+ - Auth Database: system-databases-auth.md
- Data Database: system-databases-data.md
- Metadata Database: system-databases-metadata.md
- Search Database: system-databases-search.md
--
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