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<h1 id="deployment">Deployment<a class="headerlink" href="#deployment" title="Permanent link">¶</a></h1>
<div class="admonition info">
<p class="admonition-title">Abstract</p>
<p>We modified some services and exchanged them with reviewed, open-source implementations that extend the functionality
even more from version 1.2 onwards. On this page, some of the configuration possible is summarized.</p>
</div>
<h2 id="authentication-service">Authentication Service<a class="headerlink" href="#authentication-service" title="Permanent link">¶</a></h2>
<h2 id="broker-service">Broker Service<a class="headerlink" href="#broker-service" title="Permanent link">¶</a></h2>
<h3 id="authentication">Authentication<a class="headerlink" href="#authentication" title="Permanent link">¶</a></h3>
<p>The RabbitMQ client can be authenticated through plain (username, password) and OAuth2 mechanisms. Note that the access
token already contains a field <code>client_id=foo</code>, so the username is optional in <code>PlainCredentials()</code>.</p>
<div class="tabbed-set tabbed-alternate" data-tabs="1:2"><input checked="checked" id="__tabbed_1_1" name="__tabbed_1" type="radio" /><input id="__tabbed_1_2" name="__tabbed_1" type="radio" /><div class="tabbed-labels"><label for="__tabbed_1_1">Plain</label><label for="__tabbed_1_2">OAuth2</label></div>
<div class="tabbed-content">
<div class="tabbed-block">
<div class="highlight"><pre><span></span><code><span class="kn">import</span> <span class="nn">pika</span>
<span class="n">credentials</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">credentials</span><span class="o">.</span><span class="n">PlainCredentials</span><span class="p">(</span><span class="s2">"foo"</span><span class="p">,</span> <span class="s2">"bar"</span><span class="p">)</span>
<span class="n">parameters</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">ConnectionParameters</span><span class="p">(</span><span class="s1">'localhost'</span><span class="p">,</span> <span class="mi">5672</span><span class="p">,</span> <span class="s1">'/'</span><span class="p">,</span> <span class="n">credentials</span><span class="p">)</span>
<span class="n">connection</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">BlockingConnection</span><span class="p">(</span><span class="n">parameters</span><span class="p">)</span>
<span class="n">channel</span> <span class="o">=</span> <span class="n">connection</span><span class="o">.</span><span class="n">channel</span><span class="p">()</span>
<span class="n">channel</span><span class="o">.</span><span class="n">queue_declare</span><span class="p">(</span><span class="n">queue</span><span class="o">=</span><span class="s1">'test'</span><span class="p">,</span> <span class="n">durable</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="n">channel</span><span class="o">.</span><span class="n">basic_publish</span><span class="p">(</span><span class="n">exchange</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span>
<span class="n">routing_key</span><span class="o">=</span><span class="s1">'test'</span><span class="p">,</span>
<span class="n">body</span><span class="o">=</span><span class="sa">b</span><span class="s1">'Hello World!'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">" [x] Sent 'Hello World!'"</span><span class="p">)</span>
<span class="n">connection</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</code></pre></div>
</div>
<div class="tabbed-block">
<div class="highlight"><pre><span></span><code><span class="kn">import</span> <span class="nn">pika</span>
<span class="n">credentials</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">credentials</span><span class="o">.</span><span class="n">PlainCredentials</span><span class="p">(</span><span class="s2">""</span><span class="p">,</span> <span class="s2">"THE_ACCESS_TOKEN"</span><span class="p">)</span>
<span class="n">parameters</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">ConnectionParameters</span><span class="p">(</span><span class="s1">'localhost'</span><span class="p">,</span> <span class="mi">5672</span><span class="p">,</span> <span class="s1">'/'</span><span class="p">,</span> <span class="n">credentials</span><span class="p">)</span>
<span class="n">connection</span> <span class="o">=</span> <span class="n">pika</span><span class="o">.</span><span class="n">BlockingConnection</span><span class="p">(</span><span class="n">parameters</span><span class="p">)</span>
<span class="n">channel</span> <span class="o">=</span> <span class="n">connection</span><span class="o">.</span><span class="n">channel</span><span class="p">()</span>
<span class="n">channel</span><span class="o">.</span><span class="n">queue_declare</span><span class="p">(</span><span class="n">queue</span><span class="o">=</span><span class="s1">'test'</span><span class="p">,</span> <span class="n">durable</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="n">channel</span><span class="o">.</span><span class="n">basic_publish</span><span class="p">(</span><span class="n">exchange</span><span class="o">=</span><span class="s1">''</span><span class="p">,</span>
<span class="n">routing_key</span><span class="o">=</span><span class="s1">'test'</span><span class="p">,</span>
<span class="n">body</span><span class="o">=</span><span class="sa">b</span><span class="s1">'Hello World!'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">" [x] Sent 'Hello World!'"</span><span class="p">)</span>
<span class="n">connection</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</code></pre></div>
</div>
</div>
</div>
<h2 id="identifier-service">Identifier Service<a class="headerlink" href="#identifier-service" title="Permanent link">¶</a></h2>
<p>From version 1.2 onwards there are two modes for the Identifier Service:</p>
<ol>
<li>Persistent Identifier (PID)</li>
<li>Digital Object Identifier (DOI)</li>
</ol>
<p>By default, the URI mode is used, creating a PID for databases or subsets. If starting the Identifier Service in DOI mode,
a DOI is minted for persistent identification of databases or subsets. Using the DOI system is entirely <em>optional</em> and
should not be done for test-deployments.</p>
<figure>
<p><img alt="" src="../images/identifier-doi.png" /></p>
<figcaption>Minting a test-DOI for a subset</figcaption>
</figure>
<h2 id="gateway-service">Gateway Service<a class="headerlink" href="#gateway-service" title="Permanent link">¶</a></h2>
<p>From version 1.2 onwards we use both HTTP and HTTPS to serve the API, especially for the Authentication Service. The Discovery
Service lists both the non-secure and secure ports.</p>
</article>
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