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docs/build/doctrees/environment.pickle
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docs/build/doctrees/index.doctree
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docs/build/html/_sources/index.rst.txt
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...@@ -5,12 +5,17 @@ DART-WRF is a Python package to run an Ensemble Data Assimilation system with th ...@@ -5,12 +5,17 @@ DART-WRF is a Python package to run an Ensemble Data Assimilation system with th
.. toctree::
:maxdepth: 2
:caption: Contents:
Contents
--------
.. toctree::
api Indices and tables
example ==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
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.. DART-WRF documentation master file, created by
sphinx-quickstart on Fri Feb 17 17:22:54 2023.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
Welcome to DART-WRF's documentation!
====================================
.. toctree::
:maxdepth: 2
:caption: Contents:
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
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@import url("basic.css");
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\ No newline at end of file
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docs/build/html/api.html
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...@@ -18,8 +18,6 @@ ...@@ -18,8 +18,6 @@
<script src="_static/js/theme.js"></script> <script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" /> <link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" /> <link rel="search" title="Search" href="search.html" />
<link rel="next" title="dartwrf" href="generated/dartwrf.html" />
<link rel="prev" title="Welcome to the DART-WRF documentation!" href="index.html" />
</head> </head>
<body class="wy-body-for-nav"> <body class="wy-body-for-nav">
...@@ -41,10 +39,8 @@ ...@@ -41,10 +39,8 @@
</form> </form>
</div> </div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul> <!-- Local TOC -->
<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li> <div class="local-toc"></div>
</ul>
</div> </div>
</div> </div>
</nav> </nav>
...@@ -80,10 +76,7 @@ ...@@ -80,10 +76,7 @@
</div> </div>
</div> </div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer"> <footer>
<a href="index.html" class="btn btn-neutral float-left" title="Welcome to the DART-WRF documentation!" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="generated/dartwrf.html" class="btn btn-neutral float-right" title="dartwrf" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/> <hr/>
......
docs/build/html/example.html
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...@@ -18,7 +18,6 @@ ...@@ -18,7 +18,6 @@
<script src="_static/js/theme.js"></script> <script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" /> <link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" /> <link rel="search" title="Search" href="search.html" />
<link rel="prev" title="dartwrf" href="generated/dartwrf.html" />
</head> </head>
<body class="wy-body-for-nav"> <body class="wy-body-for-nav">
...@@ -40,11 +39,11 @@ ...@@ -40,11 +39,11 @@
</form> </form>
</div> </div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul class="current"> <!-- Local TOC -->
<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li> <div class="local-toc"><ul>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Workflow</a></li> <li><a class="reference internal" href="#">Workflow</a></li>
</ul> </ul>
</div>
</div> </div>
</div> </div>
</nav> </nav>
...@@ -170,9 +169,7 @@ clusterB.userdir = ‘/home/pathB/myuser/’ ...@@ -170,9 +169,7 @@ clusterB.userdir = ‘/home/pathB/myuser/’
</div> </div>
</div> </div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer"> <footer>
<a href="generated/dartwrf.html" class="btn btn-neutral float-left" title="dartwrf" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
</div>
<hr/> <hr/>
......
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</form> </form>
</div> </div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul> <!-- Local TOC -->
<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li> <div class="local-toc"></div>
<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
</ul>
</div> </div>
</div> </div>
</nav> </nav>
...@@ -70,36 +67,391 @@ ...@@ -70,36 +67,391 @@
<h1 id="index">Index</h1> <h1 id="index">Index</h1>
<div class="genindex-jumpbox"> <div class="genindex-jumpbox">
<a href="#D"><strong>D</strong></a> <a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a> | <a href="#M"><strong>M</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#W"><strong>W</strong></a>
</div> </div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.append_file">append_file() (in module dartwrf.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.archivedir">archivedir (dartwrf.utils.ClusterConfig property)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.backup_scripts">backup_scripts() (dartwrf.utils.ClusterConfig method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.obs.html#dartwrf.obs.error_models.calc_obserr_WV">calc_obserr_WV() (in module dartwrf.obs.error_models)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.clean_wrfdir">clean_wrfdir() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.obs.html#dartwrf.obs.error_models.cloudimpact">cloudimpact() (in module dartwrf.obs.error_models)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig">ClusterConfig (class in dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.copy">copy() (in module dartwrf.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.copy_contents">copy_contents() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.copy_scp_srvx8">copy_scp_srvx8() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.create_job">create_job() (dartwrf.utils.ClusterConfig method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.old_functions.create_obsseq_in_separate_obs">create_obsseq_in_separate_obs() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.prep_IC_prior.create_updated_wrfinput_from_wrfout">create_updated_wrfinput_from_wrfout() (in module dartwrf.prep_IC_prior)</a>
</li>
<li><a href="dartwrf.html#dartwrf.prep_IC_prior.create_wrfrst_in_WRF_rundir">create_wrfrst_in_WRF_rundir() (in module dartwrf.prep_IC_prior)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2> <h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.dartrundir">dartrundir (dartwrf.utils.ClusterConfig property)</a>
</li>
<li> <li>
dartwrf dartwrf
<ul> <ul>
<li><a href="generated/dartwrf.html#module-dartwrf">module</a> <li><a href="dartwrf.html#module-dartwrf">module</a>, <a href="generated/dartwrf.html#module-dartwrf">[1]</a>
</li>
</ul></li>
<li>
dartwrf.obs
<ul>
<li><a href="dartwrf.obs.html#module-dartwrf.obs">module</a>
</li>
</ul></li>
<li>
dartwrf.obs.calculate_obs_locations
<ul>
<li><a href="dartwrf.obs.html#module-dartwrf.obs.calculate_obs_locations">module</a>
</li>
</ul></li>
<li>
dartwrf.obs.error_models
<ul>
<li><a href="dartwrf.obs.html#module-dartwrf.obs.error_models">module</a>
</li>
</ul></li>
<li>
dartwrf.obsseq
<ul>
<li><a href="dartwrf.html#module-dartwrf.obsseq">module</a>
</li>
</ul></li>
<li>
dartwrf.obsseq_to_netcdf
<ul>
<li><a href="dartwrf.html#module-dartwrf.obsseq_to_netcdf">module</a>
</li>
</ul></li>
<li>
dartwrf.old_functions
<ul>
<li><a href="dartwrf.html#module-dartwrf.old_functions">module</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
dartwrf.prep_IC_prior
<ul>
<li><a href="dartwrf.html#module-dartwrf.prep_IC_prior">module</a>
</li>
</ul></li>
<li>
dartwrf.run_obs_diag
<ul>
<li><a href="dartwrf.html#module-dartwrf.run_obs_diag">module</a>
</li>
</ul></li>
<li>
dartwrf.update_IC
<ul>
<li><a href="dartwrf.html#module-dartwrf.update_IC">module</a>
</li>
</ul></li>
<li>
dartwrf.utils
<ul>
<li><a href="dartwrf.html#module-dartwrf.utils">module</a>
</li>
</ul></li>
<li>
dartwrf.wrfinput_add_geo
<ul>
<li><a href="dartwrf.html#module-dartwrf.wrfinput_add_geo">module</a>
</li> </li>
</ul></li> </ul></li>
<li>
dartwrf.wrfout_add_geo
<ul>
<li><a href="dartwrf.html#module-dartwrf.wrfout_add_geo">module</a>
</li>
</ul></li>
<li><a href="dartwrf.html#dartwrf.obsseq.degrees_to_rad">degrees_to_rad() (in module dartwrf.obsseq)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.determine_nlayers">determine_nlayers() (dartwrf.obsseq.ObsRecord method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.obs.html#dartwrf.obs.calculate_obs_locations.evenly_on_grid">evenly_on_grid() (in module dartwrf.obs.calculate_obs_locations)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.ExperimentConfiguration">ExperimentConfiguration (class in dartwrf.utils)</a>
</li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.get_from_cartesian_grid">get_from_cartesian_grid() (dartwrf.obsseq.ObsRecord method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.get_lon_lat">get_lon_lat() (dartwrf.obsseq.ObsRecord method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.get_posterior_Hx">get_posterior_Hx() (dartwrf.obsseq.ObsRecord method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.get_preamble_content">get_preamble_content() (dartwrf.obsseq.ObsSeq method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.get_prior_Hx">get_prior_Hx() (dartwrf.obsseq.ObsRecord method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.get_truth_Hx">get_truth_Hx() (dartwrf.obsseq.ObsRecord method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.link_contents">link_contents() (in module dartwrf.utils)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq_to_netcdf.listdir_dirs">listdir_dirs() (in module dartwrf.obsseq_to_netcdf)</a>
</li>
</ul></td> </ul></td>
</tr></table> </tr></table>
<h2 id="M">M</h2> <h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr> <table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul> <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.mkdir">mkdir() (in module dartwrf.utils)</a>
</li>
<li> <li>
module module
<ul> <ul>
<li><a href="generated/dartwrf.html#module-dartwrf">dartwrf</a> <li><a href="dartwrf.html#module-dartwrf">dartwrf</a>, <a href="generated/dartwrf.html#module-dartwrf">[1]</a>
</li>
<li><a href="dartwrf.obs.html#module-dartwrf.obs">dartwrf.obs</a>
</li>
<li><a href="dartwrf.obs.html#module-dartwrf.obs.calculate_obs_locations">dartwrf.obs.calculate_obs_locations</a>
</li>
<li><a href="dartwrf.obs.html#module-dartwrf.obs.error_models">dartwrf.obs.error_models</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.obsseq">dartwrf.obsseq</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.obsseq_to_netcdf">dartwrf.obsseq_to_netcdf</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.old_functions">dartwrf.old_functions</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.prep_IC_prior">dartwrf.prep_IC_prior</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.run_obs_diag">dartwrf.run_obs_diag</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.update_IC">dartwrf.update_IC</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.utils">dartwrf.utils</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.wrfinput_add_geo">dartwrf.wrfinput_add_geo</a>
</li>
<li><a href="dartwrf.html#module-dartwrf.wrfout_add_geo">dartwrf.wrfout_add_geo</a>
</li> </li>
</ul></li> </ul></li>
</ul></td> </ul></td>
</tr></table> </tr></table>
<h2 id="O">O</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.old_functions.obs_operator_nature">obs_operator_nature() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.obs_to_dict">obs_to_dict() (dartwrf.obsseq.ObsSeq method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord">ObsRecord (class in dartwrf.obsseq)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq">ObsSeq (class in dartwrf.obsseq)</a>
</li>
<li><a href="dartwrf.obs.html#dartwrf.obs.error_models.OE_model_harnisch_WV62">OE_model_harnisch_WV62() (in module dartwrf.obs.error_models)</a>
</li>
<li><a href="dartwrf.obs.html#dartwrf.obs.error_models.OE_model_harnisch_WV73">OE_model_harnisch_WV73() (in module dartwrf.obs.error_models)</a>
</li>
</ul></td>
</tr></table>
<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.plot">plot() (dartwrf.obsseq.ObsSeq method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.plot_box">plot_box() (in module dartwrf.obsseq)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.run_obs_diag.prepare">prepare() (in module dartwrf.run_obs_diag)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.print">print() (in module dartwrf.utils)</a>
</li>
</ul></td>
</tr></table>
<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.rad_to_degrees">rad_to_degrees() (in module dartwrf.obsseq)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.read_preamble">read_preamble() (dartwrf.obsseq.ObsSeq method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.old_functions.read_prior_obs">read_prior_obs() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.old_functions.read_truth_obs_obsseq">read_truth_obs_obsseq() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.old_functions.recycle_output">recycle_output() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.old_functions.replace_errors_obsseqout">replace_errors_obsseqout() (in module dartwrf.old_functions)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.Shellslurm.run">run() (dartwrf.utils.Shellslurm method)</a>
<ul>
<li><a href="dartwrf.html#dartwrf.wrfinput_add_geo.run">(in module dartwrf.wrfinput_add_geo)</a>
</li>
<li><a href="dartwrf.html#dartwrf.wrfout_add_geo.run">(in module dartwrf.wrfout_add_geo)</a>
</li>
</ul></li>
<li><a href="dartwrf.html#dartwrf.old_functions.run_Hx">run_Hx() (in module dartwrf.old_functions)</a>
</li>
<li><a href="dartwrf.html#dartwrf.run_obs_diag.run_obs_seq_to_netcdf">run_obs_seq_to_netcdf() (in module dartwrf.run_obs_diag)</a>
</li>
<li><a href="dartwrf.html#dartwrf.run_obs_diag.run_obsdiag">run_obsdiag() (in module dartwrf.run_obs_diag)</a>
</li>
</ul></td>
</tr></table>
<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.script_to_str">script_to_str() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.scripts_rundir">scripts_rundir (dartwrf.utils.ClusterConfig property)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.sed_inplace">sed_inplace() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.setup">setup() (dartwrf.utils.ClusterConfig method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.shell">shell() (in module dartwrf.utils)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.Shellslurm">Shellslurm (class in dartwrf.utils)</a>
</li>
<li><a href="dartwrf.obs.html#dartwrf.obs.calculate_obs_locations.square_array_from_domaincenter">square_array_from_domaincenter() (in module dartwrf.obs.calculate_obs_locations)</a>
</li>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsRecord.superob">superob() (dartwrf.obsseq.ObsRecord method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.symlink">symlink() (in module dartwrf.utils)</a>
</li>
</ul></td>
</tr></table>
<h2 id="T">T</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.to_dart">to_dart() (dartwrf.obsseq.ObsSeq method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.obsseq.ObsSeq.to_pandas">to_pandas() (dartwrf.obsseq.ObsSeq method)</a>
</li>
<li><a href="dartwrf.html#dartwrf.utils.try_remove">try_remove() (in module dartwrf.utils)</a>
</li>
</ul></td>
</tr></table>
<h2 id="U">U</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.update_IC.update_initials_in_WRF_rundir">update_initials_in_WRF_rundir() (in module dartwrf.update_IC)</a>
</li>
</ul></td>
</tr></table>
<h2 id="W">W</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.utils.ClusterConfig.wrf_rundir">wrf_rundir() (dartwrf.utils.ClusterConfig method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="dartwrf.html#dartwrf.run_obs_diag.write_input_filelist">write_input_filelist() (in module dartwrf.run_obs_diag)</a>
</li>
</ul></td>
</tr></table>
</div> </div>
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...@@ -18,7 +18,6 @@ ...@@ -18,7 +18,6 @@
<script src="_static/js/theme.js"></script> <script src="_static/js/theme.js"></script>
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...@@ -40,11 +39,12 @@ ...@@ -40,11 +39,12 @@
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<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li> <li><a class="reference internal" href="#">Welcome to the DART-WRF documentation!</a></li>
<li><a class="reference internal" href="#indices-and-tables">Indices and tables</a></li>
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</div>
</div> </div>
</div> </div>
</nav> </nav>
...@@ -72,23 +72,30 @@ ...@@ -72,23 +72,30 @@
<section id="welcome-to-the-dart-wrf-documentation"> <section id="welcome-to-the-dart-wrf-documentation">
<h1>Welcome to the DART-WRF documentation!<a class="headerlink" href="#welcome-to-the-dart-wrf-documentation" title="Permalink to this heading"></a></h1> <h1>Welcome to the DART-WRF documentation!<a class="headerlink" href="#welcome-to-the-dart-wrf-documentation" title="Permalink to this heading"></a></h1>
<p>DART-WRF is a Python package to run an Ensemble Data Assimilation system with the software packages DART and WRF.</p> <p>DART-WRF is a Python package to run an Ensemble Data Assimilation system with the software packages DART and WRF.</p>
<section id="contents">
<h2>Contents<a class="headerlink" href="#contents" title="Permalink to this heading"></a></h2>
<div class="toctree-wrapper compound"> <div class="toctree-wrapper compound">
<ul>
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<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
</ul>
</div> </div>
<dl class="field-list simple">
<dt class="field-odd">maxdepth<span class="colon">:</span></dt>
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</dd>
<dt class="field-even">caption<span class="colon">:</span></dt>
<dd class="field-even"><p>Contents:</p>
</dd>
</dl>
</section> </section>
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<!DOCTYPE html>
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</section>
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<ul class="simple">
<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
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# Project: DART-WRF # Project: DART-WRF
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"dartwrf.evaluate_posterior module": [[1, "dartwrf-evaluate-posterior-module"]], "dartwrf.evaluate_prior module": [[1, "dartwrf-evaluate-prior-module"]], "dartwrf.link_dart_rttov module": [[1, "dartwrf-link-dart-rttov-module"]], "dartwrf.obsseq module": [[1, "module-dartwrf.obsseq"]], "dartwrf.obsseq_2dim module": [[1, "dartwrf-obsseq-2dim-module"]], "dartwrf.obsseq_to_netcdf module": [[1, "module-dartwrf.obsseq_to_netcdf"]], "dartwrf.old_functions module": [[1, "module-dartwrf.old_functions"]], "dartwrf.prep_IC_prior module": [[1, "module-dartwrf.prep_IC_prior"]], "dartwrf.prepare_namelist module": [[1, "dartwrf-prepare-namelist-module"]], "dartwrf.prepare_wrfrundir module": [[1, "dartwrf-prepare-wrfrundir-module"]], "dartwrf.run_obs_diag module": [[1, "module-dartwrf.run_obs_diag"]], "dartwrf.update_IC module": [[1, "module-dartwrf.update_IC"]], "dartwrf.utils module": [[1, "module-dartwrf.utils"]], "dartwrf.wrfinput_add_geo module": [[1, "module-dartwrf.wrfinput_add_geo"]], "dartwrf.wrfout_add_geo module": [[1, "module-dartwrf.wrfout_add_geo"]], "Module contents": [[1, "module-dartwrf"], [2, "module-dartwrf.obs"]], "dartwrf.obs package": [[2, "dartwrf-obs-package"]], "dartwrf.obs.calculate_obs_locations module": [[2, "module-dartwrf.obs.calculate_obs_locations"]], "dartwrf.obs.error_models module": [[2, "module-dartwrf.obs.error_models"]], "Workflow": [[3, "workflow"]], "dartwrf": [[4, "module-dartwrf"], [6, "dartwrf"]], "Welcome to the DART-WRF documentation!": [[5, "welcome-to-the-dart-wrf-documentation"]], "Indices and tables": [[5, "indices-and-tables"]]}, "indexentries": {"clusterconfig (class in dartwrf.utils)": [[1, "dartwrf.utils.ClusterConfig"]], "experimentconfiguration (class in dartwrf.utils)": [[1, "dartwrf.utils.ExperimentConfiguration"]], "obsrecord (class in dartwrf.obsseq)": [[1, "dartwrf.obsseq.ObsRecord"]], "obsseq (class in dartwrf.obsseq)": [[1, "dartwrf.obsseq.ObsSeq"]], "shellslurm (class in dartwrf.utils)": [[1, "dartwrf.utils.Shellslurm"]], "append_file() (in module dartwrf.utils)": [[1, "dartwrf.utils.append_file"]], "archivedir (dartwrf.utils.clusterconfig property)": [[1, "dartwrf.utils.ClusterConfig.archivedir"]], "backup_scripts() (dartwrf.utils.clusterconfig method)": [[1, "dartwrf.utils.ClusterConfig.backup_scripts"]], "clean_wrfdir() (in module dartwrf.utils)": [[1, "dartwrf.utils.clean_wrfdir"]], "copy() (in module dartwrf.utils)": [[1, "dartwrf.utils.copy"]], "copy_contents() (in module dartwrf.utils)": [[1, "dartwrf.utils.copy_contents"]], "copy_scp_srvx8() (in module dartwrf.utils)": [[1, "dartwrf.utils.copy_scp_srvx8"]], "create_job() (dartwrf.utils.clusterconfig method)": [[1, "dartwrf.utils.ClusterConfig.create_job"]], "create_obsseq_in_separate_obs() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.create_obsseq_in_separate_obs"]], "create_updated_wrfinput_from_wrfout() (in module dartwrf.prep_ic_prior)": [[1, "dartwrf.prep_IC_prior.create_updated_wrfinput_from_wrfout"]], "create_wrfrst_in_wrf_rundir() (in module dartwrf.prep_ic_prior)": [[1, "dartwrf.prep_IC_prior.create_wrfrst_in_WRF_rundir"]], "dartrundir (dartwrf.utils.clusterconfig property)": [[1, "dartwrf.utils.ClusterConfig.dartrundir"]], "dartwrf": [[1, "module-dartwrf"], [4, "module-dartwrf"]], "dartwrf.obsseq": [[1, "module-dartwrf.obsseq"]], "dartwrf.obsseq_to_netcdf": [[1, "module-dartwrf.obsseq_to_netcdf"]], "dartwrf.old_functions": [[1, "module-dartwrf.old_functions"]], "dartwrf.prep_ic_prior": [[1, "module-dartwrf.prep_IC_prior"]], "dartwrf.run_obs_diag": [[1, "module-dartwrf.run_obs_diag"]], "dartwrf.update_ic": [[1, "module-dartwrf.update_IC"]], "dartwrf.utils": [[1, "module-dartwrf.utils"]], "dartwrf.wrfinput_add_geo": [[1, "module-dartwrf.wrfinput_add_geo"]], "dartwrf.wrfout_add_geo": [[1, "module-dartwrf.wrfout_add_geo"]], "degrees_to_rad() (in module dartwrf.obsseq)": [[1, "dartwrf.obsseq.degrees_to_rad"]], "determine_nlayers() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.determine_nlayers"]], "get_from_cartesian_grid() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.get_from_cartesian_grid"]], "get_lon_lat() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.get_lon_lat"]], "get_posterior_hx() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.get_posterior_Hx"]], "get_preamble_content() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.get_preamble_content"]], "get_prior_hx() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.get_prior_Hx"]], "get_truth_hx() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.get_truth_Hx"]], "link_contents() (in module dartwrf.utils)": [[1, "dartwrf.utils.link_contents"]], "listdir_dirs() (in module dartwrf.obsseq_to_netcdf)": [[1, "dartwrf.obsseq_to_netcdf.listdir_dirs"]], "mkdir() (in module dartwrf.utils)": [[1, "dartwrf.utils.mkdir"]], "module": [[1, "module-dartwrf"], [1, "module-dartwrf.obsseq"], [1, "module-dartwrf.obsseq_to_netcdf"], [1, "module-dartwrf.old_functions"], [1, "module-dartwrf.prep_IC_prior"], [1, "module-dartwrf.run_obs_diag"], [1, "module-dartwrf.update_IC"], [1, "module-dartwrf.utils"], [1, "module-dartwrf.wrfinput_add_geo"], [1, "module-dartwrf.wrfout_add_geo"], [2, "module-dartwrf.obs"], [2, "module-dartwrf.obs.calculate_obs_locations"], [2, "module-dartwrf.obs.error_models"], [4, "module-dartwrf"]], "obs_operator_nature() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.obs_operator_nature"]], "obs_to_dict() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.obs_to_dict"]], "plot() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.plot"]], "plot_box() (in module dartwrf.obsseq)": [[1, "dartwrf.obsseq.plot_box"]], "prepare() (in module dartwrf.run_obs_diag)": [[1, "dartwrf.run_obs_diag.prepare"]], "print() (in module dartwrf.utils)": [[1, "dartwrf.utils.print"]], "rad_to_degrees() (in module dartwrf.obsseq)": [[1, "dartwrf.obsseq.rad_to_degrees"]], "read_preamble() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.read_preamble"]], "read_prior_obs() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.read_prior_obs"]], "read_truth_obs_obsseq() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.read_truth_obs_obsseq"]], "recycle_output() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.recycle_output"]], "replace_errors_obsseqout() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.replace_errors_obsseqout"]], "run() (dartwrf.utils.shellslurm method)": [[1, "dartwrf.utils.Shellslurm.run"]], "run() (in module dartwrf.wrfinput_add_geo)": [[1, "dartwrf.wrfinput_add_geo.run"]], "run() (in module dartwrf.wrfout_add_geo)": [[1, "dartwrf.wrfout_add_geo.run"]], "run_hx() (in module dartwrf.old_functions)": [[1, "dartwrf.old_functions.run_Hx"]], "run_obs_seq_to_netcdf() (in module dartwrf.run_obs_diag)": [[1, "dartwrf.run_obs_diag.run_obs_seq_to_netcdf"]], "run_obsdiag() (in module dartwrf.run_obs_diag)": [[1, "dartwrf.run_obs_diag.run_obsdiag"]], "script_to_str() (in module dartwrf.utils)": [[1, "dartwrf.utils.script_to_str"]], "scripts_rundir (dartwrf.utils.clusterconfig property)": [[1, "dartwrf.utils.ClusterConfig.scripts_rundir"]], "sed_inplace() (in module dartwrf.utils)": [[1, "dartwrf.utils.sed_inplace"]], "setup() (dartwrf.utils.clusterconfig method)": [[1, "dartwrf.utils.ClusterConfig.setup"]], "shell() (in module dartwrf.utils)": [[1, "dartwrf.utils.shell"]], "superob() (dartwrf.obsseq.obsrecord method)": [[1, "dartwrf.obsseq.ObsRecord.superob"]], "symlink() (in module dartwrf.utils)": [[1, "dartwrf.utils.symlink"]], "to_dart() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.to_dart"]], "to_pandas() (dartwrf.obsseq.obsseq method)": [[1, "dartwrf.obsseq.ObsSeq.to_pandas"]], "try_remove() (in module dartwrf.utils)": [[1, "dartwrf.utils.try_remove"]], "update_initials_in_wrf_rundir() (in module dartwrf.update_ic)": [[1, "dartwrf.update_IC.update_initials_in_WRF_rundir"]], "wrf_rundir() (dartwrf.utils.clusterconfig method)": [[1, "dartwrf.utils.ClusterConfig.wrf_rundir"]], "write_input_filelist() (in module dartwrf.run_obs_diag)": [[1, "dartwrf.run_obs_diag.write_input_filelist"]], "oe_model_harnisch_wv62() (in module dartwrf.obs.error_models)": [[2, "dartwrf.obs.error_models.OE_model_harnisch_WV62"]], "oe_model_harnisch_wv73() (in module dartwrf.obs.error_models)": [[2, "dartwrf.obs.error_models.OE_model_harnisch_WV73"]], "calc_obserr_wv() (in module dartwrf.obs.error_models)": [[2, "dartwrf.obs.error_models.calc_obserr_WV"]], "cloudimpact() (in module dartwrf.obs.error_models)": [[2, "dartwrf.obs.error_models.cloudimpact"]], "dartwrf.obs": [[2, "module-dartwrf.obs"]], "dartwrf.obs.calculate_obs_locations": [[2, "module-dartwrf.obs.calculate_obs_locations"]], "dartwrf.obs.error_models": [[2, "module-dartwrf.obs.error_models"]], "evenly_on_grid() (in module dartwrf.obs.calculate_obs_locations)": [[2, "dartwrf.obs.calculate_obs_locations.evenly_on_grid"]], "square_array_from_domaincenter() (in module dartwrf.obs.calculate_obs_locations)": [[2, "dartwrf.obs.calculate_obs_locations.square_array_from_domaincenter"]]}})
\ No newline at end of file \ No newline at end of file
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[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"
[project]
name = "dartwrf"
authors = [{name = "Lukas Kugler", email = "lukas.kugler@univie.ac.at"}]
dynamic = ["version", "description"]
docs/source/dartwrf.obs.rst 0 → 100644
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dartwrf.obs package
===================
Submodules
----------
dartwrf.obs.calculate\_obs\_locations module
--------------------------------------------
.. automodule:: dartwrf.obs.calculate_obs_locations
:members:
:undoc-members:
:show-inheritance:
dartwrf.obs.error\_models module
--------------------------------
.. automodule:: dartwrf.obs.error_models
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: dartwrf.obs
:members:
:undoc-members:
:show-inheritance:
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dartwrf package
===============
Subpackages
-----------
.. toctree::
:maxdepth: 4
dartwrf.config
dartwrf.obs
Submodules
----------
dartwrf.assim\_synth\_obs module
--------------------------------
.. automodule:: dartwrf.assim_synth_obs
:members:
:undoc-members:
:show-inheritance:
dartwrf.cleanup\_exp module
---------------------------
.. automodule:: dartwrf.cleanup_exp
:members:
:undoc-members:
:show-inheritance:
dartwrf.create\_obs\_upfront module
-----------------------------------
.. automodule:: dartwrf.create_obs_upfront
:members:
:undoc-members:
:show-inheritance:
dartwrf.create\_obsseq module
-----------------------------
.. automodule:: dartwrf.create_obsseq
:members:
:undoc-members:
:show-inheritance:
dartwrf.create\_wbubble\_wrfinput module
----------------------------------------
.. automodule:: dartwrf.create_wbubble_wrfinput
:members:
:undoc-members:
:show-inheritance:
dartwrf.evaluate\_posterior module
----------------------------------
.. automodule:: dartwrf.evaluate_posterior
:members:
:undoc-members:
:show-inheritance:
dartwrf.evaluate\_prior module
------------------------------
.. automodule:: dartwrf.evaluate_prior
:members:
:undoc-members:
:show-inheritance:
dartwrf.link\_dart\_rttov module
--------------------------------
.. automodule:: dartwrf.link_dart_rttov
:members:
:undoc-members:
:show-inheritance:
dartwrf.obsseq module
---------------------
.. automodule:: dartwrf.obsseq
:members:
:undoc-members:
:show-inheritance:
dartwrf.obsseq\_2dim module
---------------------------
.. automodule:: dartwrf.obsseq_2dim
:members:
:undoc-members:
:show-inheritance:
dartwrf.obsseq\_to\_netcdf module
---------------------------------
.. automodule:: dartwrf.obsseq_to_netcdf
:members:
:undoc-members:
:show-inheritance:
dartwrf.old\_functions module
-----------------------------
.. automodule:: dartwrf.old_functions
:members:
:undoc-members:
:show-inheritance:
dartwrf.prep\_IC\_prior module
------------------------------
.. automodule:: dartwrf.prep_IC_prior
:members:
:undoc-members:
:show-inheritance:
dartwrf.prepare\_namelist module
--------------------------------
.. automodule:: dartwrf.prepare_namelist
:members:
:undoc-members:
:show-inheritance:
dartwrf.prepare\_wrfrundir module
---------------------------------
.. automodule:: dartwrf.prepare_wrfrundir
:members:
:undoc-members:
:show-inheritance:
dartwrf.run\_obs\_diag module
-----------------------------
.. automodule:: dartwrf.run_obs_diag
:members:
:undoc-members:
:show-inheritance:
dartwrf.update\_IC module
-------------------------
.. automodule:: dartwrf.update_IC
:members:
:undoc-members:
:show-inheritance:
dartwrf.utils module
--------------------
.. automodule:: dartwrf.utils
:members:
:undoc-members:
:show-inheritance:
dartwrf.wrfinput\_add\_geo module
---------------------------------
.. automodule:: dartwrf.wrfinput_add_geo
:members:
:undoc-members:
:show-inheritance:
dartwrf.wrfout\_add\_geo module
-------------------------------
.. automodule:: dartwrf.wrfout_add_geo
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: dartwrf
:members:
:undoc-members:
:show-inheritance:
docs/source/index.rst
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...@@ -5,12 +5,17 @@ DART-WRF is a Python package to run an Ensemble Data Assimilation system with th ...@@ -5,12 +5,17 @@ DART-WRF is a Python package to run an Ensemble Data Assimilation system with th
.. toctree::
:maxdepth: 2
:caption: Contents:
Contents
--------
.. toctree::
api Indices and tables
example ==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
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dartwrf
=======
.. toctree::
:maxdepth: 4
dartwrf
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