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diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
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diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
index 839d3a9830a8f2838063bffa0c2f725e7ac5d85a..daf446ffd30688f98b194270878d724fc96817b1 100644
--- a/docs/build/html/.buildinfo
+++ b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 512dbb367b2d1501c30ac13c1b597739
+config: 99e195874bd4b203adb5461dc893eb82
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_sources/example.rst.txt b/docs/build/html/_sources/example.rst.txt
index 79d4afc15f5cadfaa135380a5df2a7292cf63df2..ee61ceefc852d1a28f33193e0fbe7da2f310930d 100644
--- a/docs/build/html/_sources/example.rst.txt
+++ b/docs/build/html/_sources/example.rst.txt
@@ -1,6 +1,6 @@
+Workflow
+========
-
-## Workflow
#### Configure your experiment
Define simulation specific variables in [`config/cfg.py`](https://github.com/lkugler/DART-WRF/blob/master/config/cfg.py).
Define paths for python, ncks, etc. in [`config/clusters.py`](https://github.com/lkugler/DART-WRF/blob/master/config/clusters.py).
diff --git a/docs/build/html/_sources/index.rst.txt b/docs/build/html/_sources/index.rst.txt
index e043d507d16e74f95ddb3bca3fdf7d549944dd82..3b23e27aadb68ffba9a22833a3fc5cd92f1deb04 100644
--- a/docs/build/html/_sources/index.rst.txt
+++ b/docs/build/html/_sources/index.rst.txt
@@ -3,18 +3,6 @@ Welcome to the DART-WRF documentation!
DART-WRF is a Python package to run an Ensemble Data Assimilation system with the software packages DART and WRF.
-- Why should I use it?
- - It's pythonic: see what it does at first glance, modular, flexible
- - It handles dependencies using SLURM without '`sleep` loops in the bash script'.
-Functions return a SLURM ID which can be used to trigger the start of another function (interface by [brentp/slurmpy](https://github.com/brentp/slurmpy)).
-
-- How does it work?
- - There are two kinds of code/scripts: One that is run immediately and one that is run later on.
- - The first one instructs the cluster (SLURM) to do the things you tell it - in the right order - using the right input.
- - The latter kind of code actually does the things. Its code is not executed right away, but when there are resources assigned to you by SLURM.
-
-- Can I use it for real weather?
- - Yes, but you need to [convert your observations into DART format.](https://docs.dart.ucar.edu)
@@ -23,7 +11,6 @@ Contents
.. toctree::
- usage
api
- docs/source/example
+ example
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<!DOCTYPE html>
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- <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
- <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
- <script src="_static/doctools.js"></script>
- <script src="_static/sphinx_highlight.js"></script>
+<html class="writer-html5" lang="en" >
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+ <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
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+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title><no title> — DART-WRF 2023.2.17 documentation</title>
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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+ <![endif]-->
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+ <script src="_static/doctools.js"></script>
+ <script src="_static/sphinx_highlight.js"></script>
+ <script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
-
- <link rel="stylesheet" href="_static/custom.css" type="text/css" />
-
-
- <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+ <link rel="next" title="dartwrf" href="generated/dartwrf.html" />
+ <link rel="prev" title="Welcome to the DART-WRF documentation!" href="index.html" />
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+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
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+ <a href="index.html" class="icon icon-home">
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+ </a>
+<div role="search">
+ <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
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+</div>
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-<h3>Related Topics</h3>
-<ul>
- <li><a href="index2.html">Documentation overview</a><ul>
- </ul></li>
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+</tr>
+</tbody>
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+
+
+ </div>
+ </div>
+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+ <a href="index.html" class="btn btn-neutral float-left" title="Welcome to the DART-WRF documentation!" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="generated/dartwrf.html" class="btn btn-neutral float-right" title="dartwrf" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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-
-
-
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+ <hr/>
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+
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-
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+ </section>
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diff --git a/docs/build/html/example.html b/docs/build/html/example.html
index 1497caae0a274c73b3a501632cffd7615549c5cb..e1d61b95a097b68b38fef2f671442c51b1f03fcb 100644
--- a/docs/build/html/example.html
+++ b/docs/build/html/example.html
@@ -1,37 +1,77 @@
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<!DOCTYPE html>
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- <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
- <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
- <script src="_static/doctools.js"></script>
- <script src="_static/sphinx_highlight.js"></script>
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
+
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>Workflow — DART-WRF 2023.2.17 documentation</title>
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+ <script src="_static/sphinx_highlight.js"></script>
+ <script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
-
- <link rel="stylesheet" href="_static/custom.css" type="text/css" />
-
-
- <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+ <link rel="prev" title="dartwrf" href="generated/dartwrf.html" />
+</head>
- </head><body>
-
+<body class="wy-body-for-nav">
+ <div class="wy-grid-for-nav">
+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+ <div class="wy-side-scroll">
+ <div class="wy-side-nav-search" >
- <div class="document">
- <div class="documentwrapper">
- <div class="bodywrapper">
+
+ <a href="index.html" class="icon icon-home">
+ DART-WRF
+ </a>
+<div role="search">
+ <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+</div>
+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Workflow</a></li>
+</ul>
- <div class="body" role="main">
-
- <p>## Workflow
-#### Configure your experiment
+ </div>
+ </div>
+ </nav>
+
+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+ <a href="index.html">DART-WRF</a>
+ </nav>
+
+ <div class="wy-nav-content">
+ <div class="rst-content">
+ <div role="navigation" aria-label="Page navigation">
+ <ul class="wy-breadcrumbs">
+ <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+ <li class="breadcrumb-item active">Workflow</li>
+ <li class="wy-breadcrumbs-aside">
+ <a href="_sources/example.rst.txt" rel="nofollow"> View page source</a>
+ </li>
+ </ul>
+ <hr/>
+</div>
+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+ <div itemprop="articleBody">
+
+ <section id="workflow">
+<h1>Workflow<a class="headerlink" href="#workflow" title="Permalink to this heading"></a></h1>
+<p>#### Configure your experiment
Define simulation specific variables in [<cite>config/cfg.py</cite>](<a class="reference external" href="https://github.com/lkugler/DART-WRF/blob/master/config/cfg.py">https://github.com/lkugler/DART-WRF/blob/master/config/cfg.py</a>).
Define paths for python, ncks, etc. in [<cite>config/clusters.py</cite>](<a class="reference external" href="https://github.com/lkugler/DART-WRF/blob/master/config/clusters.py">https://github.com/lkugler/DART-WRF/blob/master/config/clusters.py</a>).
Dependencies are <cite>numpy, pandas, scipy, xarray, netCDF4</cite>. Install non-standard packages with <cite>pip install docopt slurmpy –user</cite>.
@@ -125,68 +165,36 @@ clusterB = ClusterConfig()
clusterB.name = ‘jet’
clusterB.userdir = ‘/home/pathB/myuser/’
<a href="#id23"><span class="problematic" id="id24">``</span></a><a href="#id25"><span class="problematic" id="id26">`</span></a></p>
+</section>
+ </div>
</div>
-
- </div>
- </div>
- <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
- <div class="sphinxsidebarwrapper">
-<h1 class="logo"><a href="index2.html">DART-WRF</a></h1>
-
-
-
-
-
-
-
-
-<h3>Navigation</h3>
-
-<div class="relations">
-<h3>Related Topics</h3>
-<ul>
- <li><a href="index2.html">Documentation overview</a><ul>
- </ul></li>
-</ul>
-</div>
-<div id="searchbox" style="display: none" role="search">
- <h3 id="searchlabel">Quick search</h3>
- <div class="searchformwrapper">
- <form class="search" action="search.html" method="get">
- <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
- <input type="submit" value="Go" />
- </form>
+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+ <a href="generated/dartwrf.html" class="btn btn-neutral float-left" title="dartwrf" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
</div>
-</div>
-<script>document.getElementById('searchbox').style.display = "block"</script>
-
-
-
-
+ <hr/>
+ <div role="contentinfo">
+ <p>© Copyright 2023, Lukas Kugler.</p>
+ </div>
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+</footer>
</div>
</div>
- <div class="clearer"></div>
- </div>
- <div class="footer">
- ©2023, Lukas Kugler.
-
- |
- Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
- & <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
-
- |
- <a href="_sources/example.rst.txt"
- rel="nofollow">Page source</a>
- </div>
-
-
-
-
- </body>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
</html>
\ No newline at end of file
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index 814f2b0555887a6b4a2072ff232cdd792f3fd76d..42493693a4ed5956d7d48d7797661b5bdc2346ac 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -1,99 +1,132 @@
-
<!DOCTYPE html>
-
-<html lang="en">
- <head>
- <meta charset="utf-8" />
- <meta name="viewport" content="width=device-width, initial-scale=1.0" />
- <title>Index — DART-WRF 2023.2.17 documentation</title>
- <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
- <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
- <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
- <script src="_static/doctools.js"></script>
- <script src="_static/sphinx_highlight.js"></script>
- <link rel="index" title="Index" href="#" />
- <link rel="search" title="Search" href="search.html" />
-
- <link rel="stylesheet" href="_static/custom.css" type="text/css" />
-
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" />
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>Index — DART-WRF 2023.2.17 documentation</title>
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+ <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
+ <!--[if lt IE 9]>
+ <script src="_static/js/html5shiv.min.js"></script>
+ <![endif]-->
- <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+ <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.6.0/jquery.min.js"></script>
+ <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
+ <script src="_static/doctools.js"></script>
+ <script src="_static/sphinx_highlight.js"></script>
+ <script src="_static/js/theme.js"></script>
+ <link rel="index" title="Index" href="#" />
+ <link rel="search" title="Search" href="search.html" />
+</head>
- </head><body>
-
+<body class="wy-body-for-nav">
+ <div class="wy-grid-for-nav">
+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+ <div class="wy-side-scroll">
+ <div class="wy-side-nav-search" >
- <div class="document">
- <div class="documentwrapper">
- <div class="bodywrapper">
+
+ <a href="index.html" class="icon icon-home">
+ DART-WRF
+ </a>
+<div role="search">
+ <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+</div>
+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <ul>
+<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li>
+<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
+</ul>
- <div class="body" role="main">
-
+ </div>
+ </div>
+ </nav>
+
+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+ <a href="index.html">DART-WRF</a>
+ </nav>
+
+ <div class="wy-nav-content">
+ <div class="rst-content">
+ <div role="navigation" aria-label="Page navigation">
+ <ul class="wy-breadcrumbs">
+ <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+ <li class="breadcrumb-item active">Index</li>
+ <li class="wy-breadcrumbs-aside">
+ </li>
+ </ul>
+ <hr/>
+</div>
+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+ <div itemprop="articleBody">
+
<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
+ <a href="#D"><strong>D</strong></a>
+ | <a href="#M"><strong>M</strong></a>
</div>
-
-
+<h2 id="D">D</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%; vertical-align: top;"><ul>
+ <li>
+ dartwrf
+
+ <ul>
+ <li><a href="generated/dartwrf.html#module-dartwrf">module</a>
+</li>
+ </ul></li>
+ </ul></td>
+</tr></table>
+
+<h2 id="M">M</h2>
+<table style="width: 100%" class="indextable genindextable"><tr>
+ <td style="width: 33%; vertical-align: top;"><ul>
+ <li>
+ module
+
+ <ul>
+ <li><a href="generated/dartwrf.html#module-dartwrf">dartwrf</a>
+</li>
+ </ul></li>
+ </ul></td>
+</tr></table>
+
+
+
+ </div>
</div>
-
- </div>
- </div>
- <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
- <div class="sphinxsidebarwrapper">
-<h1 class="logo"><a href="index2.html">DART-WRF</a></h1>
-
-
-
-
-
-
-
-
-<h3>Navigation</h3>
-
-<div class="relations">
-<h3>Related Topics</h3>
-<ul>
- <li><a href="index2.html">Documentation overview</a><ul>
- </ul></li>
-</ul>
-</div>
-<div id="searchbox" style="display: none" role="search">
- <h3 id="searchlabel">Quick search</h3>
- <div class="searchformwrapper">
- <form class="search" action="search.html" method="get">
- <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
- <input type="submit" value="Go" />
- </form>
- </div>
-</div>
-<script>document.getElementById('searchbox').style.display = "block"</script>
-
-
-
-
+ <footer>
+ <hr/>
+ <div role="contentinfo">
+ <p>© Copyright 2023, Lukas Kugler.</p>
+ </div>
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+</footer>
</div>
</div>
- <div class="clearer"></div>
- </div>
- <div class="footer">
- ©2023, Lukas Kugler.
-
- |
- Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
- & <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
-
- </div>
-
-
-
-
- </body>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
</html>
\ No newline at end of file
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index 16f27f10760b9c65174491d974fc9e36ca6d4e13..741af69e45e7a35b9e2be41247449fc57b9b8af8 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -1,120 +1,116 @@
-
<!DOCTYPE html>
-
-<html lang="en">
- <head>
- <meta charset="utf-8" />
- <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
-
- <title>Welcome to the DART-WRF documentation! — DART-WRF 2023.2.17 documentation</title>
- <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
- <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
- <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
- <script src="_static/doctools.js"></script>
- <script src="_static/sphinx_highlight.js"></script>
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
+
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>Welcome to the DART-WRF documentation! — DART-WRF 2023.2.17 documentation</title>
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+ <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
+ <!--[if lt IE 9]>
+ <script src="_static/js/html5shiv.min.js"></script>
+ <![endif]-->
+
+ <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.6.0/jquery.min.js"></script>
+ <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
+ <script src="_static/doctools.js"></script>
+ <script src="_static/sphinx_highlight.js"></script>
+ <script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
-
- <link rel="stylesheet" href="_static/custom.css" type="text/css" />
-
-
- <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+ <link rel="next" title="<no title>" href="api.html" />
+</head>
- </head><body>
-
+<body class="wy-body-for-nav">
+ <div class="wy-grid-for-nav">
+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+ <div class="wy-side-scroll">
+ <div class="wy-side-nav-search" >
- <div class="document">
- <div class="documentwrapper">
- <div class="bodywrapper">
+
+ <a href="#" class="icon icon-home">
+ DART-WRF
+ </a>
+<div role="search">
+ <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+</div>
+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <ul>
+<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li>
+<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
+</ul>
- <div class="body" role="main">
-
+ </div>
+ </div>
+ </nav>
+
+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+ <a href="#">DART-WRF</a>
+ </nav>
+
+ <div class="wy-nav-content">
+ <div class="rst-content">
+ <div role="navigation" aria-label="Page navigation">
+ <ul class="wy-breadcrumbs">
+ <li><a href="#" class="icon icon-home" aria-label="Home"></a></li>
+ <li class="breadcrumb-item active">Welcome to the DART-WRF documentation!</li>
+ <li class="wy-breadcrumbs-aside">
+ <a href="_sources/index.rst.txt" rel="nofollow"> View page source</a>
+ </li>
+ </ul>
+ <hr/>
+</div>
+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+ <div itemprop="articleBody">
+
<section id="welcome-to-the-dart-wrf-documentation">
-<h1>Welcome to the DART-WRF documentation!<a class="headerlink" href="#welcome-to-the-dart-wrf-documentation" title="Permalink to this heading">¶</a></h1>
+<h1>Welcome to the DART-WRF documentation!<a class="headerlink" href="#welcome-to-the-dart-wrf-documentation" title="Permalink to this heading"></a></h1>
<p>DART-WRF is a Python package to run an Ensemble Data Assimilation system with the software packages DART and WRF.</p>
-<ul class="simple">
-<li><p>Why should I use it?
-- It’s pythonic: see what it does at first glance, modular, flexible
-- It handles dependencies using SLURM without ‘<cite>sleep</cite> loops in the bash script’.</p></li>
-</ul>
-<p>Functions return a SLURM ID which can be used to trigger the start of another function (interface by [brentp/slurmpy](<a class="reference external" href="https://github.com/brentp/slurmpy">https://github.com/brentp/slurmpy</a>)).</p>
-<ul class="simple">
-<li><p>How does it work?
-- There are two kinds of code/scripts: One that is run immediately and one that is run later on.
-- The first one instructs the cluster (SLURM) to do the things you tell it - in the right order - using the right input.
-- The latter kind of code actually does the things. Its code is not executed right away, but when there are resources assigned to you by SLURM.</p></li>
-<li><p>Can I use it for real weather?
-- Yes, but you need to [convert your observations into DART format.](<a class="reference external" href="https://docs.dart.ucar.edu">https://docs.dart.ucar.edu</a>)</p></li>
-</ul>
<section id="contents">
-<h2>Contents<a class="headerlink" href="#contents" title="Permalink to this heading">¶</a></h2>
+<h2>Contents<a class="headerlink" href="#contents" title="Permalink to this heading"></a></h2>
<div class="toctree-wrapper compound">
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li>
+<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
+</ul>
</div>
</section>
</section>
+ </div>
</div>
-
- </div>
- </div>
- <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
- <div class="sphinxsidebarwrapper">
-<h1 class="logo"><a href="index2.html">DART-WRF</a></h1>
-
-
-
-
-
-
-
-
-<h3>Navigation</h3>
-
-<div class="relations">
-<h3>Related Topics</h3>
-<ul>
- <li><a href="index2.html">Documentation overview</a><ul>
- </ul></li>
-</ul>
-</div>
-<div id="searchbox" style="display: none" role="search">
- <h3 id="searchlabel">Quick search</h3>
- <div class="searchformwrapper">
- <form class="search" action="search.html" method="get">
- <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
- <input type="submit" value="Go" />
- </form>
+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+ <a href="api.html" class="btn btn-neutral float-right" title="<no title>" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
-</div>
-<script>document.getElementById('searchbox').style.display = "block"</script>
-
-
-
-
+ <hr/>
+ <div role="contentinfo">
+ <p>© Copyright 2023, Lukas Kugler.</p>
+ </div>
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+</footer>
</div>
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- <div class="clearer"></div>
- </div>
- <div class="footer">
- ©2023, Lukas Kugler.
-
- |
- Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
- & <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
-
- |
- <a href="_sources/index.rst.txt"
- rel="nofollow">Page source</a>
- </div>
-
-
-
-
- </body>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
</html>
\ No newline at end of file
diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
index 67e9294dd995a78edee1af5aab09545a18ab7c9e..c8d516c930bfdbaf37a0b7015513febd3ad2d996 100644
Binary files a/docs/build/html/objects.inv and b/docs/build/html/objects.inv differ
diff --git a/docs/build/html/search.html b/docs/build/html/search.html
index 075b53210fd7f8493b41c43341df5424d824740d..51336d1c30e10233f99d713a5918c0bb9c4720ef 100644
--- a/docs/build/html/search.html
+++ b/docs/build/html/search.html
@@ -1,118 +1,119 @@
-
<!DOCTYPE html>
-
-<html lang="en">
- <head>
- <meta charset="utf-8" />
- <meta name="viewport" content="width=device-width, initial-scale=1.0" />
- <title>Search — DART-WRF 2023.2.17 documentation</title>
- <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
- <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" />
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>Search — DART-WRF 2023.2.17 documentation</title>
+ <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+ <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
- <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
- <script src="_static/doctools.js"></script>
- <script src="_static/sphinx_highlight.js"></script>
+ <!--[if lt IE 9]>
+ <script src="_static/js/html5shiv.min.js"></script>
+ <![endif]-->
+
+ <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.6.0/jquery.min.js"></script>
+ <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
+ <script src="_static/doctools.js"></script>
+ <script src="_static/sphinx_highlight.js"></script>
+ <script src="_static/js/theme.js"></script>
<script src="_static/searchtools.js"></script>
<script src="_static/language_data.js"></script>
<link rel="index" title="Index" href="genindex.html" />
- <link rel="search" title="Search" href="#" />
- <script src="searchindex.js" defer></script>
-
-
- <link rel="stylesheet" href="_static/custom.css" type="text/css" />
-
-
- <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+ <link rel="search" title="Search" href="#" />
+</head>
+<body class="wy-body-for-nav">
+ <div class="wy-grid-for-nav">
+ <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+ <div class="wy-side-scroll">
+ <div class="wy-side-nav-search" >
- </head><body>
-
-
- <div class="document">
- <div class="documentwrapper">
- <div class="bodywrapper">
+
+ <a href="index.html" class="icon icon-home">
+ DART-WRF
+ </a>
+<div role="search">
+ <form id="rtd-search-form" class="wy-form" action="#" method="get">
+ <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+ <input type="hidden" name="check_keywords" value="yes" />
+ <input type="hidden" name="area" value="default" />
+ </form>
+</div>
+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <ul>
+<li class="toctree-l1"><a class="reference internal" href="generated/dartwrf.html">dartwrf</a></li>
+<li class="toctree-l1"><a class="reference internal" href="example.html">Workflow</a></li>
+</ul>
- <div class="body" role="main">
-
- <h1 id="search-documentation">Search</h1>
-
+ </div>
+ </div>
+ </nav>
+
+ <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
+ <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+ <a href="index.html">DART-WRF</a>
+ </nav>
+
+ <div class="wy-nav-content">
+ <div class="rst-content">
+ <div role="navigation" aria-label="Page navigation">
+ <ul class="wy-breadcrumbs">
+ <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
+ <li class="breadcrumb-item active">Search</li>
+ <li class="wy-breadcrumbs-aside">
+ </li>
+ </ul>
+ <hr/>
+</div>
+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+ <div itemprop="articleBody">
+
<noscript>
- <div class="admonition warning">
- <p>
- Please activate JavaScript to enable the search
- functionality.
- </p>
+ <div id="fallback" class="admonition warning">
+ <p class="last">
+ Please activate JavaScript to enable the search functionality.
+ </p>
</div>
</noscript>
-
-
- <p>
- Searching for multiple words only shows matches that contain
- all words.
- </p>
-
-
- <form action="" method="get">
- <input type="text" name="q" aria-labelledby="search-documentation" value="" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
- <input type="submit" value="search" />
- <span id="search-progress" style="padding-left: 10px"></span>
- </form>
-
-
+
<div id="search-results">
</div>
-
+ </div>
</div>
-
- </div>
- </div>
- <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
- <div class="sphinxsidebarwrapper">
-<h1 class="logo"><a href="index2.html">DART-WRF</a></h1>
-
-
-
-
-
-
-
-
-<h3>Navigation</h3>
-
-<div class="relations">
-<h3>Related Topics</h3>
-<ul>
- <li><a href="index2.html">Documentation overview</a><ul>
- </ul></li>
-</ul>
-</div>
-
-
-
-
+ <footer>
+ <hr/>
+ <div role="contentinfo">
+ <p>© Copyright 2023, Lukas Kugler.</p>
+ </div>
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+</footer>
</div>
</div>
- <div class="clearer"></div>
- </div>
- <div class="footer">
- ©2023, Lukas Kugler.
-
- |
- Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
- & <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
-
- </div>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+ <script>
+ jQuery(function() { Search.loadIndex("searchindex.js"); });
+ </script>
+
+ <script id="searchindexloader"></script>
+
-
-
- </body>
+</body>
</html>
\ No newline at end of file
diff --git a/docs/build/html/searchindex.js b/docs/build/html/searchindex.js
index 6880cbd39db7deaad02713032ff71cdd311fce75..6ea2ae123d033ea6ebee33b3fe181969a2a7d268 100644
--- a/docs/build/html/searchindex.js
+++ b/docs/build/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["api", "example", "index", "index2"], "filenames": ["api.rst", "example.rst", "index.rst", "index2.rst"], "titles": ["<no title>", "<no title>", "Welcome to the DART-WRF documentation!", "Welcome to DART-WRF\u2019s documentation!"], "terms": {"workflow": 1, "configur": 1, "your": [1, 2], "experi": 1, "defin": 1, "simul": 1, "specif": 1, "variabl": 1, "config": 1, "cfg": 1, "py": 1, "http": [1, 2], "github": [1, 2], "com": [1, 2], "lkugler": 1, "dart": 1, "wrf": 1, "blob": 1, "master": 1, "path": 1, "python": [1, 2], "nck": 1, "etc": 1, "cluster": [1, 2], "depend": [1, 2], "ar": [1, 2], "numpi": 1, "panda": 1, "scipi": 1, "xarrai": 1, "netcdf4": 1, "instal": 1, "non": 1, "standard": 1, "packag": [1, 2], "pip": 1, "docopt": 1, "slurmpi": [1, 2], "user": 1, "i": [1, 2], "us": [1, 2], "meta": 1, "routin": 1, "function": [1, 2], "like": 1, "run_en": 1, "which": [1, 2], "schedul": 1, "prepar": 1, "initi": 1, "condit": 1, "from": 1, "input_sound": 1, "1": 1, "start": [1, 2], "time": 1, "begin": 1, "dt": 1, "datetim": 1, "2008": 1, "7": 1, "30": 1, "6": 1, "2": 1, "need": [1, 2], "directori": 1, "certain": 1, "file": 1, "id": [1, 2], "prepare_wrfrundir": 1, "3": 1, "creat": 1, "3d": 1, "run_id": 1, "depends_on": 1, "run": [1, 2], "free": 1, "forecast": 1, "let": 1, "": [1, 2], "sai": 1, "you": [1, 2], "want": 1, "6z": 1, "prior": 1, "an": [1, 2], "assimil": [1, 2], "9z": 1, "Then": 1, "can": [1, 2], "abov": 1, "step": 1, "ensembl": [1, 2], "integr": 1, "here": 1, "end": 1, "until": 1, "input_is_restart": 1, "fals": 1, "output_restart_interv": 1, "total_second": 1, "60": 1, "where": 1, "object": 1, "To": 1, "observ": [1, 2], "thi": 1, "command": 1, "prior_init_tim": 1, "prior_valid_tim": 1, "prior_path_exp": 1, "updat": 1, "data": [1, 2], "In": 1, "order": [1, 2], "continu": 1, "after": 1, "posterior": 1, "increment": 1, "set": 1, "prepare_ic_from_prior": 1, "str": 1, "model": 1, "state": 1, "restart": 1, "update_ic_from_da": 1, "wrfrst": 1, "filter_restart": 1, "copi": 1, "so": 1, "en": 1, "timedelta_integr": 1, "restart_path": 1, "archivedir": 1, "strftime": 1, "y": 1, "m": 1, "d_": 1, "h": 1, "timedelta_btw_assim": 1, "timedelta": 1, "exampl": 1, "generate_fre": 1, "final": 1, "slurm": [1, 2], "submiss": 1, "submit": 1, "job": 1, "queue": 1, "itself": 1, "soon": 1, "resourc": [1, 2], "avail": 1, "most": 1, "onli": 1, "one": [1, 2], "node": 1, "done": 1, "arrai": 1, "across": 1, "e": 1, "g": 1, "10": 1, "squeue": 1, "u": 1, "whoami": 1, "sort": 1, "jobid": 1, "partit": 1, "name": 1, "st": 1, "nodelist": 1, "reason": 1, "1710274": 1, "mem_0384": 1, "prepwrfr": 1, "pd": 1, "0": 1, "00": 1, "prioriti": 1, "1710275": 1, "ic": 1, "1710276": 1, "assim": 1, "42": 1, "1710277": 1, "1710278": 1, "1710279": 1, "prewrf2": 1, "1710280_": 1, "runwrf2": 1, "1710281": 1, "prttov": 1, "1710282": 1, "3a": 1, "1710283": 1, "1710284": 1, "1710285": 1, "1710286_": 1, "1710287": 1, "easili": 1, "switch": 1, "between": 1, "clustera": 1, "clusterconfig": 1, "vsc": 1, "userdir": 1, "home": 1, "patha": 1, "myuser": 1, "clusterb": 1, "jet": 1, "pathb": 1, "system": 2, "softwar": 2, "why": 2, "should": 2, "It": 2, "see": 2, "what": 2, "doe": 2, "first": 2, "glanc": 2, "modular": 2, "flexibl": 2, "handl": 2, "without": 2, "sleep": 2, "loop": 2, "bash": 2, "script": 2, "return": 2, "trigger": 2, "anoth": 2, "interfac": 2, "brentp": 2, "how": 2, "work": 2, "There": 2, "two": 2, "kind": 2, "code": 2, "One": 2, "immedi": 2, "later": 2, "The": 2, "instruct": 2, "do": 2, "thing": 2, "tell": 2, "right": 2, "input": 2, "latter": 2, "actual": 2, "Its": 2, "execut": 2, "awai": 2, "when": 2, "assign": 2, "real": 2, "weather": 2, "ye": 2, "convert": 2, "format": 2, "doc": 2, "ucar": 2, "edu": 2, "index": 3, "modul": 3, "search": 3, "page": 3}, "objects": {}, "objtypes": {}, "objnames": {}, "titleterms": {"welcom": [2, 3], "dart": [2, 3], "wrf": [2, 3], "document": [2, 3], "content": 2, "": 3, "indic": 3, "tabl": 3}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx": 57}, "alltitles": {"Welcome to the DART-WRF documentation!": [[2, "welcome-to-the-dart-wrf-documentation"]], "Contents": [[2, "contents"]], "Welcome to DART-WRF\u2019s documentation!": [[3, "welcome-to-dart-wrf-s-documentation"]], "Indices and tables": [[3, "indices-and-tables"]]}, "indexentries": {}})
\ No newline at end of file
+Search.setIndex({"docnames": ["api", "example", "generated/dartwrf", "index"], "filenames": ["api.rst", "example.rst", "generated/dartwrf.rst", "index.rst"], "titles": ["<no title>", "Workflow", "dartwrf", "Welcome to the DART-WRF documentation!"], "terms": {"workflow": 3, "configur": 1, "your": 1, "experi": 1, "defin": 1, "simul": 1, "specif": 1, "variabl": 1, "config": 1, "cfg": 1, "py": 1, "http": 1, "github": 1, "com": 1, "lkugler": 1, "dart": 1, "wrf": 1, "blob": 1, "master": 1, "path": 1, "python": [1, 3], "nck": 1, "etc": 1, "cluster": 1, "depend": 1, "ar": 1, "numpi": 1, "panda": 1, "scipi": 1, "xarrai": 1, "netcdf4": 1, "instal": 1, "non": 1, "standard": 1, "packag": [1, 3], "pip": 1, "docopt": 1, "slurmpi": 1, "user": 1, "i": [1, 3], "us": 1, "meta": 1, "routin": 1, "function": 1, "like": 1, "run_en": 1, "which": 1, "schedul": 1, "prepar": 1, "initi": 1, "condit": 1, "from": 1, "input_sound": 1, "1": 1, "start": 1, "time": 1, "begin": 1, "dt": 1, "datetim": 1, "2008": 1, "7": 1, "30": 1, "6": 1, "2": 1, "need": 1, "directori": 1, "certain": 1, "file": 1, "id": 1, "prepare_wrfrundir": 1, "3": 1, "creat": 1, "3d": 1, "run_id": 1, "depends_on": 1, "run": [1, 3], "free": 1, "forecast": 1, "let": 1, "": 1, "sai": 1, "you": 1, "want": 1, "6z": 1, "prior": 1, "an": [1, 3], "assimil": [1, 3], "9z": 1, "Then": 1, "can": 1, "abov": 1, "step": 1, "ensembl": [1, 3], "integr": 1, "here": 1, "end": 1, "until": 1, "input_is_restart": 1, "fals": 1, "output_restart_interv": 1, "total_second": 1, "60": 1, "where": 1, "object": 1, "To": 1, "observ": 1, "thi": 1, "command": 1, "prior_init_tim": 1, "prior_valid_tim": 1, "prior_path_exp": 1, "updat": 1, "data": [1, 3], "In": 1, "order": 1, "continu": 1, "after": 1, "posterior": 1, "increment": 1, "set": 1, "prepare_ic_from_prior": 1, "str": 1, "model": 1, "state": 1, "restart": 1, "update_ic_from_da": 1, "wrfrst": 1, "filter_restart": 1, "copi": 1, "so": 1, "en": 1, "timedelta_integr": 1, "restart_path": 1, "archivedir": 1, "strftime": 1, "y": 1, "m": 1, "d_": 1, "h": 1, "timedelta_btw_assim": 1, "timedelta": 1, "exampl": 1, "generate_fre": 1, "final": 1, "slurm": 1, "submiss": 1, "submit": 1, "job": 1, "queue": 1, "itself": 1, "soon": 1, "resourc": 1, "avail": 1, "most": 1, "onli": 1, "one": 1, "node": 1, "done": 1, "arrai": 1, "across": 1, "e": 1, "g": 1, "10": 1, "squeue": 1, "u": 1, "whoami": 1, "sort": 1, "jobid": 1, "partit": 1, "name": 1, "st": 1, "nodelist": 1, "reason": 1, "1710274": 1, "mem_0384": 1, "prepwrfr": 1, "pd": 1, "0": 1, "00": 1, "prioriti": 1, "1710275": 1, "ic": 1, "1710276": 1, "assim": 1, "42": 1, "1710277": 1, "1710278": 1, "1710279": 1, "prewrf2": 1, "1710280_": 1, "runwrf2": 1, "1710281": 1, "prttov": 1, "1710282": 1, "3a": 1, "1710283": 1, "1710284": 1, "1710285": 1, "1710286_": 1, "1710287": 1, "easili": 1, "switch": 1, "between": 1, "clustera": 1, "clusterconfig": 1, "vsc": 1, "userdir": 1, "home": 1, "patha": 1, "myuser": 1, "clusterb": 1, "jet": 1, "pathb": 1, "system": 3, "softwar": 3, "dartwrf": 3}, "objects": {"": [[2, 0, 0, "-", "dartwrf"]]}, "objtypes": {"0": "py:module"}, "objnames": {"0": ["py", "module", "Python module"]}, "titleterms": {"dartwrf": 2, "welcom": 3, "dart": 3, "wrf": 3, "document": 3, "content": 3, "workflow": 1}, "envversion": {"sphinx.domains.c": 2, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 8, "sphinx.domains.index": 1, "sphinx.domains.javascript": 2, "sphinx.domains.math": 2, "sphinx.domains.python": 3, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1, "sphinx": 57}, "alltitles": {"dartwrf": [[2, "module-dartwrf"]], "Workflow": [[1, "workflow"]], "Welcome to the DART-WRF documentation!": [[3, "welcome-to-the-dart-wrf-documentation"]], "Contents": [[3, "contents"]]}, "indexentries": {}})
\ No newline at end of file
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 777a97ef6433627299a29c35e79d3363c9f29dfa..e4ce287f71f518675a7b8a44e81a1b3d55dd4e2f 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -1,3 +1,6 @@
+import os
+import sys
+sys.path.insert(0, os.path.abspath('../../dartwrf/'))
# Configuration file for the Sphinx documentation builder.
# -- Project information
@@ -15,6 +18,7 @@ extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.autosummary',
'sphinx.ext.intersphinx',
+ 'sphinx.ext.napoleon'
]
intersphinx_mapping = {
diff --git a/docs/source/conf.py_old b/docs/source/conf.py_old
deleted file mode 100644
index f4f84cc48bc5f7c22ea8d173dc39fc8c2af388ff..0000000000000000000000000000000000000000
--- a/docs/source/conf.py_old
+++ /dev/null
@@ -1,36 +0,0 @@
-# Configuration file for the Sphinx documentation builder.
-
-# -- Project information
-
-project = 'DART-WRF'
-copyright = '2023, University of Vienna'
-author = 'Lukas Kugler'
-
-release = '0.1'
-version = '0.1.0'
-
-# -- General configuration
-
-extensions = [
- 'sphinx.ext.duration',
- 'sphinx.ext.doctest',
- 'sphinx.ext.autodoc',
- 'sphinx.ext.autosummary',
- 'sphinx.ext.intersphinx',
-]
-
-intersphinx_mapping = {
- 'python': ('https://docs.python.org/3/', None),
- 'sphinx': ('https://www.sphinx-doc.org/en/master/', None),
-}
-intersphinx_disabled_domains = ['std']
-
-templates_path = ['_templates']
-
-# -- Options for HTML output
-
-html_theme = 'sphinx_rtd_theme'
-
-# -- Options for EPUB output
-epub_show_urls = 'footnote'
-
diff --git a/docs/source/example.rst b/docs/source/example.rst
index 79d4afc15f5cadfaa135380a5df2a7292cf63df2..ee61ceefc852d1a28f33193e0fbe7da2f310930d 100644
--- a/docs/source/example.rst
+++ b/docs/source/example.rst
@@ -1,6 +1,6 @@
+Workflow
+========
-
-## Workflow
#### Configure your experiment
Define simulation specific variables in [`config/cfg.py`](https://github.com/lkugler/DART-WRF/blob/master/config/cfg.py).
Define paths for python, ncks, etc. in [`config/clusters.py`](https://github.com/lkugler/DART-WRF/blob/master/config/clusters.py).
diff --git a/docs/source/generated/dartwrf.rst b/docs/source/generated/dartwrf.rst
new file mode 100644
index 0000000000000000000000000000000000000000..38e693b1d13deeeff6ed090c5ccd87434f62fa05
--- /dev/null
+++ b/docs/source/generated/dartwrf.rst
@@ -0,0 +1,23 @@
+dartwrf
+=======
+
+.. automodule:: dartwrf
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/docs/source/index.rst b/docs/source/index.rst
index f5bb4268f96d3dd278da6e96d4757be7a82c5743..3b23e27aadb68ffba9a22833a3fc5cd92f1deb04 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -11,7 +11,6 @@ Contents
.. toctree::
- usage
api
- docs/source/example
+ example