small fix

scripts/run_obs_diag.py

@@ -2,10 +2,10 @@ import os, sys, shutil, glob
 from config.cfg import exp, cluster
 from utils import symlink, copy, sed_inplace, append_file
 
-folder_obs_seq_final = '/home/fs71386/lkugler/data/sim_archive/exp_v1.11_LMU_filter/obs_seq_final/'
-files = sorted(glob.glob(folder_obs_seq_final+'/*.final'))  # input for obs_diag program
-
+def run(folder_obs_seq_final):
     rundir_program = '/home/fs71386/lkugler/data/DART-WRF/rundir/'
+
+    files = sorted(glob.glob(folder_obs_seq_final+'/*.final'))  # input for obs_diag program
     fpath = rundir_program+'/obsdiag_inputlist.txt'
     print('writing', fpath)
 
@@ -30,11 +30,17 @@ os.chdir(rundir_program)
     symlink(cluster.dart_srcdir+'/obs_diag', rundir_program+'/obs_diag')
     os.system('./obs_diag >& obs_diag.log')
 
-print('moving output to', cluster.archivedir()+'/obs_diag_output.nc')
-copy(rundir_program+'/obs_diag_output.nc', cluster.archivedir()+'/obs_diag_output.nc')
+    outdir = '/'.join(folder_obs_seq_final.split('/')[:-1])
+    print('moving output to', outdir+'/obs_diag_output.nc')
+    copy(rundir_program+'/obs_diag_output.nc', outdir+'/obs_diag_output.nc')
 
     print('running obs_seq_to_netcdf program')
-symlink(cluster.dart_srcdir+'/obs_seq_to_netcdf', rundir_program+'/obs_diag_output.nc')
+    symlink(cluster.dart_srcdir+'/obs_seq_to_netcdf', rundir_program+'/obs_seq_to_netcdf')
     os.system('./obs_seq_to_netcdf  >& obs_seq_to_netcdf.log')
-print('moving output to', cluster.archivedir()+'/obs_seq_output.nc')
-copy(rundir_program+'/obs_diag_output.nc', cluster.archivedir()+'/obs_seq_output.nc')
+    print('moving output to', outdir+'/obs_seq_output.nc')
+    copy(rundir_program+'/obs_diag_output.nc', outdir+'/obs_seq_output.nc')
+
+
+if __name__ == '__main__':
+    folder_obs_seq_final = '/home/fs71386/lkugler/data/sim_archive/exp_v1.11_LMU_filter_domainobs/obs_seq_final/'
+    run(folder_obs_seq_final)