From 853c180a5b3e335aa0f2cc1eaa588adc45a33d0b Mon Sep 17 00:00:00 2001
From: lkugler <lukas.kugler@gmail.com>
Date: Mon, 13 Mar 2023 12:26:25 +0100
Subject: [PATCH] minor things
---
dartwrf/assim_synth_obs.py | 13 ++++++-------
dartwrf/config | 1 -
dartwrf/obsseq_to_netcdf.py | 2 +-
dartwrf/prepare_wrfrundir.py | 2 +-
docs/source/dartwrf.rst | 1 -
docs/source/index.rst | 2 +-
6 files changed, 9 insertions(+), 12 deletions(-)
delete mode 120000 dartwrf/config
diff --git a/dartwrf/assim_synth_obs.py b/dartwrf/assim_synth_obs.py
index 89dd560..460375e 100755
--- a/dartwrf/assim_synth_obs.py
+++ b/dartwrf/assim_synth_obs.py
@@ -229,13 +229,13 @@ def archive_filteroutput(time):
def get_parametrized_error(obscfg, osf_prior):
"""Calculate the parametrized error for an ObsConfig (one obs type)
- Args
- obscfg (object): configuration of observations
- osf_prior (obsseq.ObsRecord): contains truth and prior values from obs_seq.final
+ Args:
+ obscfg (object): Configuration of observations
+ osf_prior (obsseq.ObsRecord): Contains truth and prior values from obs_seq.final
(output of ./final in evaluate-mode (no posterior))
- Returns
- np.array observation error std-dev for assimilation
+ Returns:
+ np.array: observation error std-dev for assimilation
"""
Hx_prior = osf_prior.get_prior_Hx().T
Hx_truth = osf_prior.get_truth_Hx()
@@ -256,8 +256,7 @@ def set_obserr_assimilate_in_obsseqout(oso, osf_prior, outfile="./obs_seq.out"):
""""Overwrite existing variance values in obs_seq.out files
Args:
- oso (ObsSeq) : python representation of obs_seq.out file,
- will be modified and written to file
+ oso (ObsSeq): python representation of obs_seq.out file, will be modified and written to file
osf_prior (ObsSeq): python representation of obs_seq.final (output of filter in evaluate-mode without posterior)
contains prior values; used for parameterized errors
diff --git a/dartwrf/config b/dartwrf/config
deleted file mode 120000
index 4088526..0000000
--- a/dartwrf/config
+++ /dev/null
@@ -1 +0,0 @@
-../config/
\ No newline at end of file
diff --git a/dartwrf/obsseq_to_netcdf.py b/dartwrf/obsseq_to_netcdf.py
index 4076595..2b5ba45 100644
--- a/dartwrf/obsseq_to_netcdf.py
+++ b/dartwrf/obsseq_to_netcdf.py
@@ -2,7 +2,7 @@ import os, sys, glob, warnings
from config.cfg import exp
from config.cluster import cluster
-import run_obs_diag as rod
+import dartwrf.run_obs_diag as rod
def listdir_dirs(path):
return [a for a in os.listdir(path) if os.path.isdir(os.path.join(path, a))]
diff --git a/dartwrf/prepare_wrfrundir.py b/dartwrf/prepare_wrfrundir.py
index d38ceda..82d6acc 100755
--- a/dartwrf/prepare_wrfrundir.py
+++ b/dartwrf/prepare_wrfrundir.py
@@ -4,7 +4,7 @@ import datetime as dt
from config.cfg import exp
from config.cluster import cluster
from dartwrf.utils import symlink, copy, link_contents
-import prepare_namelist
+from dartrwrf import prepare_namelist
if __name__ == '__main__':
diff --git a/docs/source/dartwrf.rst b/docs/source/dartwrf.rst
index c01ca5f..996f7fd 100644
--- a/docs/source/dartwrf.rst
+++ b/docs/source/dartwrf.rst
@@ -7,7 +7,6 @@ Subpackages
.. toctree::
:maxdepth: 4
- dartwrf.config
dartwrf.obs
Submodules
diff --git a/docs/source/index.rst b/docs/source/index.rst
index 96baade..77b37dd 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -18,7 +18,7 @@ DART-WRF is available at `github.com/lkugler/DART-WRF <https://github.com/lkugle
Other helpful resources
-----------------------
-**DART documentation** `[here] <https://docs.dart.ucar.edu/en/latest/README.html>`_
+**DART documentation** `[docs.ucar.edu] <https://docs.dart.ucar.edu/en/latest/README.html>`_
**WRF user guide** `[here] <http://www2.mmm.ucar.edu/wrf/users/docs/user_guide_v4/v4.2/WRFUsersGuide_v42.pdf>`_
--
GitLab