From ad40b2bde07962285adccca10787890f4bf7072c Mon Sep 17 00:00:00 2001
From: voigta80 <aiko.voigt@univie.ac.at>
Date: Mon, 6 Sep 2021 18:05:55 +0200
Subject: [PATCH] Updated gitignore
---
.gitignore | 3 +-
.../benchmark_cubulation-checkpoint.ipynb | 126 ------------------
2 files changed, 2 insertions(+), 127 deletions(-)
delete mode 100644 benchmarks/.ipynb_checkpoints/benchmark_cubulation-checkpoint.ipynb
diff --git a/.gitignore b/.gitignore
index b90f543..f937f88 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,4 +1,5 @@
dist/
-*/.ipynb_checkpoints
+
+**/.ipynb_checkpoints
tricco/__pycache__
diff --git a/benchmarks/.ipynb_checkpoints/benchmark_cubulation-checkpoint.ipynb b/benchmarks/.ipynb_checkpoints/benchmark_cubulation-checkpoint.ipynb
deleted file mode 100644
index 0506e40..0000000
--- a/benchmarks/.ipynb_checkpoints/benchmark_cubulation-checkpoint.ipynb
+++ /dev/null
@@ -1,126 +0,0 @@
-{
- "cells": [
- {
- "cell_type": "markdown",
- "metadata": {},
- "source": [
- "# Notebook for benchmarking runtime of cubulation\n",
- "\n",
- "Tests are performed on an exclusive compute node of the DKRZ supercomputer Mistral in Hamburg, Germany.\n",
- "\n",
- "A compute node has the following specs (https://www.dkrz.de/up/systems/mistral/configuration):\n",
- " * 2x 12-core Intel Xeon E5-2680 v3 (Haswell) @ 2.5GHz\n",
- " * 24 cores (48 logical CPUs)\n",
- " * 64 GB main memory\n",
- " \n",
- "As for the grids we consider limited-area ICON grids that cover a large part of the North Atlantic. They were for example used for the NAWDEX simulations described Senf, F., A. Voigt et al, 2020: Increasing Resolution and Resolving Convection Improve the Simulation of Cloud‐Radiative Effects Over the North Atlantic, JGR Atmospheres. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2020JD032667."
- ]
- },
- {
- "cell_type": "markdown",
- "metadata": {},
- "source": [
- "Load required packages. Note: adding cc3d to system path is needed because it is required by tricco."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 1,
- "metadata": {},
- "outputs": [],
- "source": [
- "import timeit\n",
- "import sys\n",
- "sys.path.append('/pf/b/b380459/connected-components-3d/')\n",
- "sys.path.append('/pf/b/b380459/BigDataClouds/tricco/')\n",
- "import tricco"
- ]
- },
- {
- "cell_type": "markdown",
- "metadata": {},
- "source": [
- "Define the start triangle and radius of outward search as a function of grid resolution."
- ]
- },
- {
- "cell_type": "code",
- "execution_count": 2,
- "metadata": {},
- "outputs": [],
- "source": [
- "dict_start = {'80000m': 5783, '40000m': 18538, '20000m': 69309, '10000m': 264792}\n",
- "dict_radius = {'80000m': 102 , '40000m': 230 , '20000m': 460 , '10000m': 2000 }"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "metadata": {},
- "outputs": [
- {
- "name": "stdout",
- "output_type": "stream",
- "text": [
- "Working on resolution of 80000m\n",
- "Time to read the grid:\n",
- "310 ms ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Time to compute cubulation:\n",
- "11.7 s ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Working on resolution of 40000m\n",
- "Time to read the grid:\n",
- "163 ms ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Time to compute cubulation:\n",
- "1min 13s ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Working on resolution of 20000m\n",
- "Time to read the grid:\n",
- "144 ms ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Time to compute cubulation:\n",
- "11min 34s ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Working on resolution of 10000m\n",
- "Time to read the grid:\n",
- "312 ms ± 0 ns per loop (mean ± std. dev. of 1 run, 1 loop each)\n",
- "Time to compute cubulation:\n"
- ]
- }
- ],
- "source": [
- "# path to grid files\n",
- "gridpath = '/work/bb1018/b380459/NAWDEX/grids/'\n",
- "\n",
- "# model resolutions under investigation\n",
- "for res in ['80000m', '40000m', '20000m', '10000m']:\n",
- " \n",
- " print('Working on resolution of', res)\n",
- " \n",
- " gridfile = 'icon-grid_nawdex_78w40e23n80n_R'+res+'.nc'\n",
- " print('Time to read the grid:')\n",
- " %timeit -r 1 -n 1 tricco.grid_functions.grid = tricco.prepare_grid(model='ICON',path=gridpath, file=gridfile)\n",
- " \n",
- " print('Time to compute cubulation:')\n",
- " %timeit -r 1 -n 1 tricco.compute_cubulation(start_triangle=dict_start[res], radius=dict_radius[res], print_progress=False)"
- ]
- }
- ],
- "metadata": {
- "kernelspec": {
- "display_name": "Nawdex-Hackathon",
- "language": "python",
- "name": "nawdex-hackathon"
- },
- "language_info": {
- "codemirror_mode": {
- "name": "ipython",
- "version": 3
- },
- "file_extension": ".py",
- "mimetype": "text/x-python",
- "name": "python",
- "nbconvert_exporter": "python",
- "pygments_lexer": "ipython3",
- "version": "3.8.10"
- }
- },
- "nbformat": 4,
- "nbformat_minor": 4
-}
--
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