diff --git a/src/cats/grids/direct_access.c b/src/cats/grids/direct_access.c
index dfcefa1be35dbd2d3e056a4054cc82c37fe00fce..cdb851962d4a98c16196a7e62f7767d1d8673b63 100644
--- a/src/cats/grids/direct_access.c
+++ b/src/cats/grids/direct_access.c
@@ -6,23 +6,23 @@
double load_input_2d_array_double(const struct cats_2d_array_double *raster, cats_dt_coord row, cats_dt_coord col)
{
valid_coordinates(&raster->dimension, row, col);
- return raster->data[row][col];
+ return raster->data[row][col]; // getter [load_input2d_array_double]
}
char load_input_2d_array_char(const struct cats_2d_array_char *raster, cats_dt_coord row, cats_dt_coord col)
{
valid_coordinates(&raster->dimension, row, col);
- return raster->data[row][col];
+ return raster->data[row][col]; // getter [load_input_2d_array_char]
}
cats_dt_environment load_input_environment_raster(struct cats_environment_raster *raster, cats_dt_coord row, cats_dt_coord col)
{
valid_coordinates(&raster->dimension, row, col);
- return raster->values[row][col];
+ return raster->values[row][col]; // getter [load_input_environment_raster]
}
void set_input_environment_raster(struct cats_environment_raster *raster, cats_dt_coord row, cats_dt_coord col, cats_dt_environment value)
{
valid_coordinates(&raster->dimension, row, col);
- raster->values[row][col] = value;
+ raster->values[row][col] = value; // getter [set_input_environment_raster]
}
\ No newline at end of file
diff --git a/src/cats/grids/grid_converters.c b/src/cats/grids/grid_converters.c
index b75b043378c205d975f8269befe77cb0e4f80b10..f76b82a9e0fc5f9b02fbfefe73d03246b10acdc9 100644
--- a/src/cats/grids/grid_converters.c
+++ b/src/cats/grids/grid_converters.c
@@ -44,7 +44,7 @@ cats_dt_environment **convert_double_to_environment(const struct cats_2d_array_d
const cats_dt_coord cols = in_grid->dimension.cols;
for (int32_t r = 0; r < rows; r++) {
for (int32_t c = 0; c < cols; c++) {
- array[r][c] = (float) in_grid->data[r][c];
+ array[r][c] = (float) in_grid->data[r][c]; // converter [convert_double_to_environment]
}
}
diff --git a/src/cats/inline_population.h b/src/cats/inline_population.h
index 376a4e2aa9b50bbcbfbc5181bc4b12a9710980f4..65f4c54706f5d753bb049c626b7d27a3b93aafb5 100644
--- a/src/cats/inline_population.h
+++ b/src/cats/inline_population.h
@@ -50,6 +50,8 @@ get_adult_population(const struct cats_grid *grid, cats_dt_coord row, cats_dt_co
{
assert(valid_population_grid(grid, row));
assert(valid_coordinates(&grid->dimension, row, col));
+ assert(grid->population[row][col] >= 0); // getter [get_adult_population]
+ return grid->population[row][col]; // getter [get_adult_population]
}
@@ -91,8 +93,7 @@ reduce_population_by(const struct cats_grid *grid, cats_dt_coord row, cats_dt_co
cats_dt_population pop = get_adult_population(grid, row, col);
if (to_reduce > pop) { to_reduce = pop; }
-
- grid->population[row][col] = pop - to_reduce;// setter;
+ grid->population[row][col] = pop - to_reduce; // setter [reduce_population_by]
return to_reduce;
}
@@ -111,7 +112,7 @@ set_population_ignore_cc(const struct cats_grid *grid, const cats_dt_coord row,
exit(EXIT_FAILURE);
}
- if (pop >= 0) grid->population[row][col] = pop; // setter ignore cc;
+ if (pop >= 0) grid->population[row][col] = pop; // setter [set_population_ignore_cc]
}
@@ -169,11 +170,11 @@ get_population_ts(const struct cats_grid *grid, const cats_dt_coord row, const c
assert(valid_population_grid(grid, row));
assert(valid_coordinates(&grid->dimension, row, col));
- cats_dt_population tmp = grid->population[row][col]; // getter
+ cats_dt_population tmp = grid->population[row][col]; // getter [get_population_ts]
if (unfiltered) *unfiltered = tmp;
- if (grid->population[row][col] >= threshold) {
+ if (grid->population[row][col] >= threshold) { // getter [get_population_ts]
return tmp;
} else {
return 0;
diff --git a/src/cats/misc/debug.c b/src/cats/misc/debug.c
index 7141dd8bb5dce5a2f3dce4f2fd4a0490a789d67f..acc0c168882ed09b64512966130da4d560bb7472 100644
--- a/src/cats/misc/debug.c
+++ b/src/cats/misc/debug.c
@@ -55,11 +55,11 @@ void debug_seeds(struct cats_grid *grid, const struct cats_configuration *conf,
{
if (row == cats_debug.misc_debug_coords.row && col == cats_debug.misc_debug_coords.col) {
fprintf(cats_debug.misc_debug_file, "%d,%d,%s,seeds,%f", grid->id, conf->time.year_current, action,
- grid->dispersed_seeds[row][col]);
+ grid->dispersed_seeds[row][col]); // debug [debug_seeds]
const int32_t seed_persistence = get_vital_age(grid, VA_SEED_PERSISTENCE);
for (int32_t i = 0; i < seed_persistence; i++) {
- if (grid->seed_bank[row][col]) {
- fprintf(cats_debug.misc_debug_file, ",%f", grid->seed_bank[row][col][i]);
+ if (grid->seed_bank[row][col]) { // debug [debug_seeds]
+ fprintf(cats_debug.misc_debug_file, ",%f", grid->seed_bank[row][col][i]); // debug [debug_seeds]
} else {
fprintf(cats_debug.misc_debug_file, ",%d", 0);
}
diff --git a/src/cats/overlays/overlay_exclusion.c b/src/cats/overlays/overlay_exclusion.c
index f68b8691b9e9215d4b0b9552f13962cffe458b2b..808b30004ffdca60fd0ace13053f76d44e05c885 100644
--- a/src/cats/overlays/overlay_exclusion.c
+++ b/src/cats/overlays/overlay_exclusion.c
@@ -110,15 +110,15 @@ struct cats_2d_array_char *translate_exclusion(const struct cats_2d_array_double
for (cats_dt_coord row = 0; row < rows; row++) {
for (cats_dt_coord col = 0; col < cols; col++) {
- const int32_t val = (int32_t) round(data->data[row][col]);
+ const int32_t val = (int32_t) round(data->data[row][col]); // converter [translate_exclusion]
if (val == 0) {
- result->data[row][col] = OL_EXCLUSION_NOT_EXCLUDED;
+ result->data[row][col] = OL_EXCLUSION_NOT_EXCLUDED; // converter [translate_exclusion]
} else if (isnan(data->data[row][col])) {
- result->data[row][col] = OL_EXCLUSION_NAN;
+ result->data[row][col] = OL_EXCLUSION_NAN; // converter [translate_exclusion]
count += 1;
} else {
- result->data[row][col] = OL_EXCLUSION_EXCLUDED;
+ result->data[row][col] = OL_EXCLUSION_EXCLUDED; // converter [translate_exclusion]
count += 1;
}
}
diff --git a/src/cats/overlays/overlay_habitat_type_cc.c b/src/cats/overlays/overlay_habitat_type_cc.c
index 87528439ccd82eb1ab19cfde11dfc378b7daa142..d922c15bffc385f0262dcf03c88b1819023e1f76 100644
--- a/src/cats/overlays/overlay_habitat_type_cc.c
+++ b/src/cats/overlays/overlay_habitat_type_cc.c
@@ -129,11 +129,11 @@ struct cats_2d_array_double *translate_habitat(const struct cats_2d_array_double
double value = data->data[row][col];
if (isnan(value)) {
- result->data[row][col] = 0.0;
+ result->data[row][col] = 0.0; // converter [translate_habitat]
} else {
int32_t val = (int32_t) round(value);
double multi = get_habitat_cc_multiplier(habitat_info, val);
- result->data[row][col] = multi;
+ result->data[row][col] = multi; // converter [translate_habitat]
}
}
}
diff --git a/src/cats/overlays/overlay_resources.c b/src/cats/overlays/overlay_resources.c
index 64a171f856e369a527a9a5d3a804722574f8f4d9..55f25784ff10137b1dd3c64df6802290a2a076c4 100644
--- a/src/cats/overlays/overlay_resources.c
+++ b/src/cats/overlays/overlay_resources.c
@@ -14,14 +14,14 @@ struct cats_2d_array_double *translate_resources(const struct cats_2d_array_doub
for (cats_dt_coord row = 0; row < rows; row++) {
for (cats_dt_coord col = 0; col < cols; col++) {
- double value = data->data[row][col];
+ double value = data->data[row][col]; // converter [translate_resources]
if (isnan(value)) {
- result->data[row][col] = 0.0;
+ result->data[row][col] = 0.0; // converter [translate_resources]
} else {
if (value <0 ) value = 0;
- result->data[row][col] = value;
+ result->data[row][col] = value; // converter [translate_resources]
}
}
}